CuGenDBv2

Gene ID	Lag0039494
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNA-binding protein 7-like isoform X1
Genome location	chr2:44903150..44905626
RNA-Seq Expression	Lag0039494
Synteny	Lag0039494
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022141807.1 RNA-binding protein 7 [Momordica charantia]

2.0e-73

74.63

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Query:  MSGRSNGCTIYV----------------------VDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSN CT+YV                      VDLHIPRDKESGKPKGYAFAEYESEEI NYAVKLFSGLV LHNR LKFAVSGQDKPSPSS AI SS
Subjt:  MSGRSNGCTIYV----------------------VDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHK RSQ  PG SSEISQYSNRLSTSCRFSAYPENHLEAPLYPGL NQSNGYG  +  YN E SQRY GTT DSFNH + RR + S PVYYPPYE L
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

XP_022932504.1 RNA-binding protein 7 isoform X1 [Cucurbita moschata]

2.6e-78

77.11

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Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKSRSQ  PG S+EIS YSNRLS SCRFSAYPENH+EAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

XP_022973396.1 RNA-binding protein 7-like isoform X1 [Cucurbita maxima]

1.2e-78

77.61

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Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKSRSQ  PG S+EIS YSNRLS SCRFSAYPENHLEAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

XP_023523852.1 RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]

5.0e-77

76.62

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Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKSRSQ  PG S+EIS YSNRLS SCRFSAY ENHLEAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPV+YPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

XP_038890486.1 RNA-binding protein 7-like [Benincasa hispida]

9.4e-68

72.5

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Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCT+Y                      VVDLHIPRDKESGKPKG+AF  YESEEITNYAVKLFSGLVTL+NRTLKFAVSGQDK SPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SN+SHKSRS    G  SEISQYS+ LSTSCRFS YPE+H+EA LYPGL NQ NGYG  LD YNKE SQRYSGTT DSFN PKSRR   SYPVYY  Y+LL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CKW6 RNA-binding protein 7

9.5e-74

74.63

Show/hide

Query:  MSGRSNGCTIYV----------------------VDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSN CT+YV                      VDLHIPRDKESGKPKGYAFAEYESEEI NYAVKLFSGLV LHNR LKFAVSGQDKPSPSS AI SS
Subjt:  MSGRSNGCTIYV----------------------VDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHK RSQ  PG SSEISQYSNRLSTSCRFSAYPENHLEAPLYPGL NQSNGYG  +  YN E SQRY GTT DSFNH + RR + S PVYYPPYE L
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

A0A6J1EWJ3 RNA-binding protein 7 isoform X2

5.6e-66

68.66

Show/hide

Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKS                       RFSAYPENH+EAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

A0A6J1EX61 RNA-binding protein 7 isoform X1

1.3e-78

77.11

Show/hide

Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKSRSQ  PG S+EIS YSNRLS SCRFSAYPENH+EAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

A0A6J1I7F0 RNA-binding protein 7-like isoform X2

2.5e-66

69.15

Show/hide

Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKS                       RFSAYPENHLEAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

A0A6J1I8J0 RNA-binding protein 7-like isoform X1

5.8e-79

77.61

Show/hide

Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSGRSNGCTIY                      VVDLHIPRDKESG+P+GYAFAEYE+EEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL
        SNISHKSRSQ  PG S+EIS YSNRLS SCRFSAYPENHLEAP YPGL NQSNGYG   D++N + SQRYSGT  DSFNHPKSRR D SYPVYYPPYELL
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELL

Query:  N
        N
Subjt:  N

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.9e-05

34.48

Show/hide

Query:  VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPS
        VV++++P+D+ +   + Y F EY SEE  +YA+K+ + ++ LH + ++   + QDK S
Subjt:  VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPS

AT4G10110.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.0e-27

42.33

Show/hide

Query:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS
        MSG SN CT+Y                      V+DLHIPRDKE+ KPKG+AFAEYE+EEI +YAVKLFSGLV+L+NRTLKFA+SGQDK        ++S
Subjt:  MSGRSNGCTIY----------------------VVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSS

Query:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRF----SAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRR
        +N  H++R Q+     S+ + Y +    S +     S  P ++ + P  PG+ N     G  L+Y     S+R  G+  DS NH + RR
Subjt:  SNISHKSRSQNFPGCSSEISQYSNRLSTSCRF----SAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRR

Sequences

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CDS sequence

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ATGTCTGGAAGATCAAATGGCTGCACTATTTACGTAGTGGACTTGCATATTCCTCGGGACAAGGAATCTGGTAAACCCAAGGGTTATGCTTTTGCAGAATATGAAAGCGA
GGAGATTACCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTAGTG
CAATCACTTCATCATCAAATATATCTCATAAGTCAAGGTCACAAAATTTTCCAGGTTGCTCTAGTGAAATATCTCAGTATTCCAATCGCTTGTCAACATCATGCAGGTTT
TCAGCGTACCCCGAGAACCATCTAGAAGCGCCTCTTTACCCTGGGTTATTTAACCAATCTAATGGGTATGGACCACAATTGGATTACTACAATAAAGAAATCAGTCAGAG
ATATTCTGGAACAACTTTCGATAGCTTTAACCATCCTAAATCACGCCGCCTTGATATGAGTTATCCAGTATACTATCCTCCATATGAACTTTTGAACTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSGRSNGCTIYVVDLHIPRDKESGKPKGYAFAEYESEEITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQNFPGCSSEISQYSNRLSTSCRF
SAYPENHLEAPLYPGLFNQSNGYGPQLDYYNKEISQRYSGTTFDSFNHPKSRRLDMSYPVYYPPYELLN

Lag0039494 (gene) of Sponge gourd (AG-4) v1 genome