CuGenDBv2

Gene ID	Lag0039529
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr2:45791791..45795752
RNA-Seq Expression	Lag0039529
Synteny	Lag0039529
Gene Ontology terms	NA
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]

1.1e-22

50.46

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +VP KFK+P  K YDG  D + HLD Y  W D + I +AIRC  FSFTL G  + WFQ+L+R+SISSF+ELARAF++QF G   + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   +  D+
Subjt:  QPGRADHDH

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]

4.4e-24

50.46

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +VP KFK+PT K +DG  DLV HLD YR WMD + + +A++C  FS TL G A+ WF++L+R SISSF+ LA+AF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   + HD+
Subjt:  QPGRADHDH

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]

1.9e-22

53.47

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +   KFK+P    YDG  D + HLD YR W D +DI +AIRC  FSFTL G A+ WF++L+R SISSF+ELA AF++QF+G R + KP   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  Q
        +
Subjt:  Q

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]

4.1e-22

50.46

Show/hide

Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        MR +VP KFK+PT K +D   D V HLD YR WMD + + +A+RC  FS TL G A+ WF++L+R SISSF+ LARAF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   +  D+
Subjt:  QPGRADHDH

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]

7.5e-24

53.21

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        MR +VP KFK+PT K +DG  + V HLD YR WMD + + DAIRC  FS TL G A+ WF++L+R SISSF+ LARAF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   + HD+
Subjt:  QPGRADHDH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D3B7 uncharacterized protein LOC111016619

5.3e-23

50.46

Show/hide

Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +VP KFK+P  K YDG  D + HLD Y  W D + I +AIRC  FSFTL G  + WFQ+L+R+SISSF+ELARAF++QF G   + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   +  D+
Subjt:  QPGRADHDH

A0A6J1D7D2 uncharacterized protein LOC111018307

2.1e-24

50.46

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +VP KFK+PT K +DG  DLV HLD YR WMD + + +A++C  FS TL G A+ WF++L+R SISSF+ LA+AF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   + HD+
Subjt:  QPGRADHDH

A0A6J1DWY0 uncharacterized protein LOC111025293

2.0e-22

50.46

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        MR +VP KFK+PT K +D   D V HLD YR WMD + + +A+RC  FS TL G A+ WF++L+R SISSF+ LARAF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   +  D+
Subjt:  QPGRADHDH

A0A6J1DZ49 uncharacterized protein LOC111024851

9.0e-23

53.47

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Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +   KFK+P    YDG  D + HLD YR W D +DI +AIRC  FSFTL G A+ WF++L+R SISSF+ELA AF++QF+G R + KP   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  Q
        +
Subjt:  Q

A0A6J1E1E7 uncharacterized protein LOC111025548

3.6e-24

53.21

Show/hide

Query:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ
        MR +VP KFK+PT K +DG  + V HLD YR WMD + + DAIRC  FS TL G A+ WF++L+R SISSF+ LARAF++QF+G R + +P   LLT+KQ
Subjt:  MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QPGRADHDH
        +   + HD+
Subjt:  QPGRADHDH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAGCCGAGGTGCCTCAGAAGTTCAAAATTCCCACATTCAAGTCGTATGATGGCAAGAAGGACCTCGTGCAACACCTAGACACCTACAGAACGTGGATGGACTTTCA
TGACATTTTAGATGCAATCAGGTGTTGTGCCTTCTCTTTCACTTTAAGAGGGTTAGCAAAGCAATGGTTTCAGAGGTTGCAAAGAAGGTCCATTAGTTCTTTCGAAGAAC
TAGCCCGAGCGTTCATCTCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATTAATCTTTTAACTGTCAAGCAACAACCAGGCCGAGCTGACCATGATCATGGT
CGAGCCGAGCTGACCATGACCATGGCCAAGGCCGAGCACATCCCTTTGGAGTTTGTCATTGAAACCGAGGCGAGGTCGAGGCTGACCAAAGATGGCCGAGACAAAGAAAA
ACCCCCACTGGAGATCAGAACCATCTTTGGAGAACCAACTGGAGGAGGTTCAAGTAGAAAAAGAAAAGCTATTGCTAGAGAAGCAAGGTTTGAATCAGAATACGAAGGCC
ATAGCTTCAACTTATCATCAGTTGCTGAAGTTTCCAACTCAGAATGGTGTAGGGATTGTCAGAGGAGAGTAGAAGACATCGAGGGAGTGTTACTCGACAATACTGAAAGA
AGTCAAGCGGCAGAAGGCCTAGGCCGACCAGGGTCGAACCGATCCGAGGCCGAGCAGGGCACACTTCCACCAACACTGAATCTGAACTTATGGAGTTTTATAGCTTCTTA
TGTATTGCATTTCATCACGAATATAAAATGCTCGATAATACGAAAAGTGGCCAAGGCCGATCCGATGGGTTTACCACATGTGCCACATAAATTGGATAACAAGGAATCCA
CACATGAGCCAACACAGGACGAGGAATTCAAGGAGCTAAGCAAAACAACACAACGCCAACTCGAGGAATACGATCAGGAAGCAGACCCTGATGGAGAGTCAAACGAAAGG
GATTGGGCCCAGCTTGGCCCAACCCTACAACTTGGTCGAGGCCAAGGCCAATGCTCACTCGGCCCACTTGGTGGGTTGAGTCCTGCCCCCTTCGCTCAGTTCTTGGAGTC
CTTGGCCGCCTCGGTTCAACCTGGTTCAGCCCAATCGGTCATGAGATGCTTAGAAACCCTAAAACAGGAGAAGGTATATAAACTCTTCTTCAACCATGAAGAAGGGACCA
AAAACTCATTCTGTAAACTCTCTTCTCTTACTCTTGCTCGTGCTCTTGACTTGCTTCCCATCTTTCTCCTTGTTGACTTAAGCATCGGAGGCGGTGTGGCAAGCACCACA
CCAATGTGCAGTCATATCTTGTTTTGCAGGCCACGTCTTTCCCCTTTCAAACAAATTTACCGTTCGTGTCATGTGAAGGTCAGGTGA

mRNA sequence

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Protein sequence

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MRAEVPQKFKIPTFKSYDGKKDLVQHLDTYRTWMDFHDILDAIRCCAFSFTLRGLAKQWFQRLQRRSISSFEELARAFISQFMGAREQRKPHINLLTVKQQPGRADHDHG
RAELTMTMAKAEHIPLEFVIETEARSRLTKDGRDKEKPPLEIRTIFGEPTGGGSSRKRKAIAREARFESEYEGHSFNLSSVAEVSNSEWCRDCQRRVEDIEGVLLDNTER
SQAAEGLGRPGSNRSEAEQGTLPPTLNLNLWSFIASYVLHFITNIKCSIIRKVAKADPMGLPHVPHKLDNKESTHEPTQDEEFKELSKTTQRQLEEYDQEADPDGESNER
DWAQLGPTLQLGRGQGQCSLGPLGGLSPAPFAQFLESLAASVQPGSAQSVMRCLETLKQEKVYKLFFNHEEGTKNSFCKLSSLTLARALDLLPIFLLVDLSIGGGVASTT
PMCSHILFCRPRLSPFKQIYRSCHVKVR

Lag0039529 (gene) of Sponge gourd (AG-4) v1 genome