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Lag0039531 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039531
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:45811070..45811519
RNA-Seq ExpressionLag0039531
SyntenyLag0039531
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW61143.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.8e-2543.75Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS KKR ++K+ LSS+ P VV+IQETK    +R+++ S+WS++   WA++ A GASGGI+I+W+      +E+V G FS+S+  A+    S W++ +YG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG
        PN+S  R+ FW EL+D+  L  P W +G
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG

RVW99790.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.8e-2542.18Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS KKR ++K+ LSS+ P VV+IQETK    +R+++ S+WS +   WA++ A GASGGI+I+W+      +E+V G FS+S+  A+    S W++ +YG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG----VISTSFVGLGRNPLA
        PN+S  R+ FW EL+D+  L  P W +G    VI  S   LG + L+
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG----VISTSFVGLGRNPLA

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.4e-3252.34Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS  KRA IKD ++S  P +VI+ ETK  ++N K IKS+WSS  I WAS+DA GASGGI++LW++ S    E++ G FS+S+H  L+D F++W+TG+Y 
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG
        P   K R+LFW+EL DL  LC P W+LG
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.4e-3251.18Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        + SWKK ALIK  +S  NP VVI+QETK+  ++  I+KS+WS+ GI W+++DA G + GI+ILWN+      E++EG+FSL+++  LSDGF FW++GIYG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWIL
        P++++   LFW+EL DL  LC  +WIL
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWIL

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]3.0e-2747.54Show/hide
Query:  RALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYGPNSSKD
        +A++K+LL   NP VVI+Q++K+  +NR ++KS+WSS  + WA+++A G+SGGI+ILW E S  + + ++G FS+S+H   + GFS WITG+YGP+S + 
Subjt:  RALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYGPNSSKD

Query:  RRLFWKELTDLQALCLPNWILG
        R  FW EL+ L  LC  NW +G
Subjt:  RRLFWKELTDLQALCLPNWILG

TrEMBL top hitse value%identityAlignment
A0A438FMD5 Transposon TX1 uncharacterized 149 kDa protein1.4e-2543.75Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS KKR ++K+ LSS+ P VV+IQETK    +R+++ S+WS++   WA++ A GASGGI+I+W+      +E+V G FS+S+  A+    S W++ +YG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG
        PN+S  R+ FW EL+D+  L  P W +G
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG

A0A438ISU8 Transposon TX1 uncharacterized 149 kDa protein1.4e-2542.18Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS KKR ++K+ LSS+ P VV+IQETK    +R+++ S+WS +   WA++ A GASGGI+I+W+      +E+V G FS+S+  A+    S W++ +YG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG----VISTSFVGLGRNPLA
        PN+S  R+ FW EL+D+  L  P W +G    VI  S   LG + L+
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG----VISTSFVGLGRNPLA

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein1.4e-2543.75Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS KKR ++K+ LSS+ P VV+IQETK    +R+++ S+WS +   WA++ A GASGGI+I+W+      +E+V G FS+S+  A+ +  S W++ +YG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG
        PN+S  R+ FW EL+D+  L  P W +G
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG

A0A6J1CVN2 uncharacterized protein LOC1110146571.2e-3252.34Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        +GS  KRA IKD ++S  P +VI+ ETK  ++N K IKS+WSS  I WAS+DA GASGGI++LW++ S    E++ G FS+S+H  L+D F++W+TG+Y 
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWILG
        P   K R+LFW+EL DL  LC P W+LG
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWILG

A0A6J1E2G6 uncharacterized protein LOC1110254051.2e-3251.18Show/hide
Query:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG
        + SWKK ALIK  +S  NP VVI+QETK+  ++  I+KS+WS+ GI W+++DA G + GI+ILWN+      E++EG+FSL+++  LSDGF FW++GIYG
Subjt:  MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYG

Query:  PNSSKDRRLFWKELTDLQALCLPNWIL
        P++++   LFW+EL DL  LC  +WIL
Subjt:  PNSSKDRRLFWKELTDLQALCLPNWIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCATGGAAAAAGCGAGCCCTTATTAAAGATCTTCTATCCTCCCAAAATCCGACAGTGGTGATCATCCAAGAGACAAAGATGGTTAATTTAAACAGGAAGATTAT
TAAATCCATTTGGAGTTCTAAGGGCATTACCTGGGCTTCTATTGATGCAGAAGGCGCTTCGGGTGGGATTGTTATCTTATGGAATGAATCCTCTTTTGTTATCAAGGAGA
TAGTCGAAGGTATTTTCTCTTTGTCCCTGCACCTCGCTTTATCTGACGGTTTCTCCTTCTGGATCACAGGCATCTATGGTCCCAATTCCTCCAAAGATAGGCGTTTGTTT
TGGAAAGAGCTTACGGATCTCCAAGCTCTTTGTCTTCCTAACTGGATATTGGGGGTGATTTCAACGTCATTCGTTGGACTTGGGAGAAATCCACTTGCACAGCTCCTACC
CGTGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCATGGAAAAAGCGAGCCCTTATTAAAGATCTTCTATCCTCCCAAAATCCGACAGTGGTGATCATCCAAGAGACAAAGATGGTTAATTTAAACAGGAAGATTAT
TAAATCCATTTGGAGTTCTAAGGGCATTACCTGGGCTTCTATTGATGCAGAAGGCGCTTCGGGTGGGATTGTTATCTTATGGAATGAATCCTCTTTTGTTATCAAGGAGA
TAGTCGAAGGTATTTTCTCTTTGTCCCTGCACCTCGCTTTATCTGACGGTTTCTCCTTCTGGATCACAGGCATCTATGGTCCCAATTCCTCCAAAGATAGGCGTTTGTTT
TGGAAAGAGCTTACGGATCTCCAAGCTCTTTGTCTTCCTAACTGGATATTGGGGGTGATTTCAACGTCATTCGTTGGACTTGGGAGAAATCCACTTGCACAGCTCCTACC
CGTGCCATGA
Protein sequenceShow/hide protein sequence
MGSWKKRALIKDLLSSQNPTVVIIQETKMVNLNRKIIKSIWSSKGITWASIDAEGASGGIVILWNESSFVIKEIVEGIFSLSLHLALSDGFSFWITGIYGPNSSKDRRLF
WKELTDLQALCLPNWILGVISTSFVGLGRNPLAQLLPVP