; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039533 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039533
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:45813747..45814286
RNA-Seq ExpressionLag0039533
SyntenyLag0039533
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1529.73Show/hide
Query:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS
        S+ K PWR I K      N +   +  G+   FW   W+ +     TYP LY LS  + A+I +LW      WNL  RR L + EI  W NL   L   +
Subjt:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS

Query:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR
              + IW     G ++  S  R+L S   +    +++FY  LWK  +PKK         + S  +   L   LP ++ + +R
Subjt:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1529.73Show/hide
Query:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS
        S+ K PWR I K      N +   +  G+   FW   W+ +     TYP LY LS  + A+I +LW      WNL  RR L + EI  W NL   L   +
Subjt:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS

Query:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR
              + IW     G ++  S  R+L S   +    +++FY  LWK  +PKK         + S  +   L   LP ++ + +R
Subjt:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-1431.82Show/hide
Query:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHL-SSF
        S+S+ PW +I K           ++  G    FW   W   +P  + YP LY LS  KE+SI D+W      W+L  RR L+E E+  W  L + + +SF
Subjt:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHL-SSF

Query:  SFTNRDE-IWQLESDGFFSTGSLTRKLASSSQSI----DKSFYRHLWKGIMPKK
            +D  +W L S+G ++  S+ + L    QS+     ++ +++LWK  +PKK
Subjt:  SFTNRDE-IWQLESDGFFSTGSLTRKLASSSQSI----DKSFYRHLWKGIMPKK

XP_015161868.1 PREDICTED: uncharacterized protein LOC107059660 [Solanum tuberosum]1.2e-1433.78Show/hide
Query:  GPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNR
        G WR+I       +N   I+VG G +TLFWED W+     +  +P L+N+SL+KEA+I ++   +N  W+L  RRHL + E+ + V L + L      N 
Subjt:  GPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNR

Query:  DE---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKL
        +E    W  +  G FS GS  R        I    ++ +WK  +P K+
Subjt:  DE---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKL

XP_026453629.1 uncharacterized protein LOC113354505 [Papaver somniferum]7.1e-1534.21Show/hide
Query:  GPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAE---NGAWNLFLRRHLQESEITEWVNLSHHLSSFSF
        G WR +       Y      +G+G++T FWED WLG  P K  +P+LYN+S KK   ++  +  +   +  WNL LRR L + EI E  NLSH L + + 
Subjt:  GPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAE---NGAWNLFLRRHLQESEITEWVNLSHHLSSFSF

Query:  TNRDE---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN
         N DE    W+  +DG F+  S    L   S  +D   ++ +W   +P K++
Subjt:  TNRDE---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN

TrEMBL top hitse value%identityAlignment
A0A0V0IA31 Putative ovule protein7.7e-1531.79Show/hide
Query:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNRDE
        WR+I      L   +   VG G+K LFW+D+W+G       +P L N+    E ++AD W+ +   WN F RRHL + E+  +V L   +  F  T  ++
Subjt:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNRDE

Query:  ---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLNSSSG
            W+ + DG FS G + RK  S         ++H+WK + P K ++  G
Subjt:  ---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLNSSSG

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.2e-1529.73Show/hide
Query:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS
        S+ K PWR I K      N +   +  G+   FW   W+ +     TYP LY LS  + A+I +LW      WNL  RR L + EI  W NL   L   +
Subjt:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS

Query:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR
              + IW     G ++  S  R+L S   +    +++FY  LWK  +PKK         + S  +   L   LP ++ + +R
Subjt:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.2e-1529.73Show/hide
Query:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS
        S+ K PWR I K      N +   +  G+   FW   W+ +     TYP LY LS  + A+I +LW      WNL  RR L + EI  W NL   L   +
Subjt:  STSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFS

Query:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR
              + IW     G ++  S  R+L S   +    +++FY  LWK  +PKK         + S  +   L   LP ++ + +R
Subjt:  FT--NRDEIWQLESDGFFSTGSLTRKLASSSQS---IDKSFYRHLWKGIMPKK--------LNSSSGSLVTLASTLPTSFSKETR

M1A801 zf-RVT domain-containing protein5.3e-1631.97Show/hide
Query:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHL-SSFSFTNRD
        WR+I K   L+   T  +VG G+K  FW+D+W G  P    +P LYNL   ++A++A+LWT +   WNL LRR+L + E+    +  + +  + + T   
Subjt:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHL-SSFSFTNRD

Query:  E--IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN
        +  +W+++S G F+  S  + L  ++    +  +R +WK  +P K+N
Subjt:  E--IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN

M1CC58 zf-RVT domain-containing protein9.0e-1634.69Show/hide
Query:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNRDE
        WR+I     L+ +   I+VG G+K  FW D+W G    K  +P L++LS  +EAS+ADLWT +   WNL LRR+L + EIT        ++  +    ++
Subjt:  WRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNRDE

Query:  ---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN
           IW+ E  G F+  S  R+L  S +      +R +W+  +P K+N
Subjt:  ---IWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAACAATCCATGAGCACCTCAAAGGGACCGTGGAGGAATATTTTCAAGAATCGTCATCTCCTATATAATTTCACTGATATTAGAGTTGGTAGAGGGGATAAAAC
ACTCTTTTGGGAAGATGTCTGGTTGGGTGCAACTCCCTTTAAAACCACATATCCATCTTTATACAACTTATCTCTCAAGAAGGAGGCCAGCATCGCTGATTTATGGACCG
CCGAAAATGGGGCCTGGAATCTCTTTTTAAGGAGACACCTTCAGGAGTCTGAAATCACTGAATGGGTCAATCTATCACACCACCTATCATCCTTTTCCTTCACTAATAGG
GATGAGATTTGGCAGCTTGAAAGTGATGGCTTTTTCTCTACAGGATCTCTCACCAGAAAATTGGCTTCCTCTTCGCAATCTATTGACAAATCTTTCTATAGACACTTATG
GAAAGGGATTATGCCAAAAAAGTTAAATTCTTCATCTGGGAGCTTAGTCACGCTTGCATCAACACTGCCGACGTCATTCAGCAAAGAAACCCGAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAACAATCCATGAGCACCTCAAAGGGACCGTGGAGGAATATTTTCAAGAATCGTCATCTCCTATATAATTTCACTGATATTAGAGTTGGTAGAGGGGATAAAAC
ACTCTTTTGGGAAGATGTCTGGTTGGGTGCAACTCCCTTTAAAACCACATATCCATCTTTATACAACTTATCTCTCAAGAAGGAGGCCAGCATCGCTGATTTATGGACCG
CCGAAAATGGGGCCTGGAATCTCTTTTTAAGGAGACACCTTCAGGAGTCTGAAATCACTGAATGGGTCAATCTATCACACCACCTATCATCCTTTTCCTTCACTAATAGG
GATGAGATTTGGCAGCTTGAAAGTGATGGCTTTTTCTCTACAGGATCTCTCACCAGAAAATTGGCTTCCTCTTCGCAATCTATTGACAAATCTTTCTATAGACACTTATG
GAAAGGGATTATGCCAAAAAAGTTAAATTCTTCATCTGGGAGCTTAGTCACGCTTGCATCAACACTGCCGACGTCATTCAGCAAAGAAACCCGAATTTAG
Protein sequenceShow/hide protein sequence
MGEQSMSTSKGPWRNIFKNRHLLYNFTDIRVGRGDKTLFWEDVWLGATPFKTTYPSLYNLSLKKEASIADLWTAENGAWNLFLRRHLQESEITEWVNLSHHLSSFSFTNR
DEIWQLESDGFFSTGSLTRKLASSSQSIDKSFYRHLWKGIMPKKLNSSSGSLVTLASTLPTSFSKETRI