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Lag0039546 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039546
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:46034238..46034749
RNA-Seq ExpressionLag0039546
SyntenyLag0039546
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.3e-0439.44Show/hide
Query:  PHGRYGSSAYNKQG---MGYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFE
        P   +    + K G    G++  +   S  +LI+C+EVAIKV+GNYCGF+P E  LID   +F+  V S +
Subjt:  PHGRYGSSAYNKQG---MGYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFE
XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]2.0e-0546.88Show/hide
Query:  GYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFENHNLLIEKRLG
        G++   D+ S    IEC +VAIKV+ NYCGFIP+E+  +D    F A VVSFE+   L  K +G
Subjt:  GYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFENHNLLIEKRLG
TrEMBL top hitse value%identityAlignment
A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein3.1e-0439.44Show/hide
Query:  PHGRYGSSAYNKQG---MGYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFE
        P   +    + K G    G++  +   S  +LI+C+EVAIKV+GNYCGF+P E  LID   +F+  V S +
Subjt:  PHGRYGSSAYNKQG---MGYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFE
A0A6J1D6X4 uncharacterized protein LOC1110181869.5e-0646.88Show/hide
Query:  GYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFENHNLLIEKRLG
        G++   D+ S    IEC +VAIKV+ NYCGFIP+E+  +D    F A VVSFE+   L  K +G
Subjt:  GYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFENHNLLIEKRLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCACGGGAGATATGGCTCGTCTGCTTACAACAAACAGGGGATGGGTTACCTTCGGTCCTCTGACAGTGAAAGCCAACTCAATCTCATCGAATGTATGGAAGTGGC
TATAAAGGTTCGAGGAAATTACTGTGGATTCATCCCCTCGGAAGTTCGTCTGATAGATAGGGACCAAACCTTCGTTGCTCATGTAGTTTCTTTTGAGAACCATAACCTTC
TGATCGAAAAGAGGTTGGGAAACATGGCGGATCTCGTCGGAGGCGGCGAGGAGCTTTTTTGGCTCGGAGATGGGCTACGGCCCAAACCCAGTGGACATTTGGCGTGTTCA
AGATGGGATCTTTTGTCCAGCGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCACGGGAGATATGGCTCGTCTGCTTACAACAAACAGGGGATGGGTTACCTTCGGTCCTCTGACAGTGAAAGCCAACTCAATCTCATCGAATGTATGGAAGTGGC
TATAAAGGTTCGAGGAAATTACTGTGGATTCATCCCCTCGGAAGTTCGTCTGATAGATAGGGACCAAACCTTCGTTGCTCATGTAGTTTCTTTTGAGAACCATAACCTTC
TGATCGAAAAGAGGTTGGGAAACATGGCGGATCTCGTCGGAGGCGGCGAGGAGCTTTTTTGGCTCGGAGATGGGCTACGGCCCAAACCCAGTGGACATTTGGCGTGTTCA
AGATGGGATCTTTTGTCCAGCGGTTAA
Protein sequenceShow/hide protein sequence
MPHGRYGSSAYNKQGMGYLRSSDSESQLNLIECMEVAIKVRGNYCGFIPSEVRLIDRDQTFVAHVVSFENHNLLIEKRLGNMADLVGGGEELFWLGDGLRPKPSGHLACS
RWDLLSSG