; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039549 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039549
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:46040049..46040387
RNA-Seq ExpressionLag0039549
SyntenyLag0039549
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-0441.79Show/hide
Query:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
        PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW   Q  L
Subjt:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-0441.79Show/hide
Query:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
        PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW   Q  L
Subjt:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein3.8e-0441.79Show/hide
Query:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
        PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW   Q  L
Subjt:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein3.8e-0441.79Show/hide
Query:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
        PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW   Q  L
Subjt:  PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALWDLLQQAL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAAAAGGTCAAGTTCTTTATTTGGGAGCTTAGTCACTCTTGTATCAACACCGCCGACGTCATTCAAAGAAAGCATCCTTGGCATTCCTATCTCCTTCTTGCTGC
TGGTTATGTTACAAGGCCAAGAAATCAGATTCATCTTTTCAGCCAATGCTCCTATGCAGCCGCCTTATGGGACCTTCTCCAACAAGCTTTGGTTGGACCTTTGCTAGACC
AGGTGACATCCTTTCCCTTATTAACTTCTCCATCGTCAGGCATCCTTTTAAAAAGAGAAGAAATTCTTATGGCTCAACTTCATCTATGCGTTTTTTTGGAATATTTGGCT
GGAGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAAAAGGTCAAGTTCTTTATTTGGGAGCTTAGTCACTCTTGTATCAACACCGCCGACGTCATTCAAAGAAAGCATCCTTGGCATTCCTATCTCCTTCTTGCTGC
TGGTTATGTTACAAGGCCAAGAAATCAGATTCATCTTTTCAGCCAATGCTCCTATGCAGCCGCCTTATGGGACCTTCTCCAACAAGCTTTGGTTGGACCTTTGCTAGACC
AGGTGACATCCTTTCCCTTATTAACTTCTCCATCGTCAGGCATCCTTTTAAAAAGAGAAGAAATTCTTATGGCTCAACTTCATCTATGCGTTTTTTTGGAATATTTGGCT
GGAGCGTAA
Protein sequenceShow/hide protein sequence
MPKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQIHLFSQCSYAAALWDLLQQALVGPLLDQVTSFPLLTSPSSGILLKREEILMAQLHLCVFLEYLA
GA