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Lag0039592 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039592
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA polymerase II C-terminal domain phosphatase-like
Genome locationchr2:46949425..46952808
RNA-Seq ExpressionLag0039592
SyntenyLag0039592
Gene Ontology termsGO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
GO:0106306 - protein serine/threonine phosphatase activity (molecular function)
GO:0106307 - protein serine/threonine phosphatase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037160.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-1286.54Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRR
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ER++R
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRR

XP_022133134.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Momordica charantia]1.5e-1361.11Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R  R++       E  +D+   V+    +V++K   C+H
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

XP_022133135.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Momordica charantia]1.5e-1361.11Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R  R++       E  +D+   V+    +V++K   C+H
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

XP_022141754.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Momordica charantia]9.0e-1459.57Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDLVDRDVRQVVNKCNHGVSAQKKLLG
        MS+VT+SPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R      R   KLE S++    D+   V + +  V ++++L G
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDLVDRDVRQVVNKCNHGVSAQKKLLG

XP_038890381.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa hispida]2.9e-1272.46Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDD
        MS+ TNSPAHSSSSDDFAAFLDVALDSHSSDSSP EKAEGDNN  ESER++R      R   KLE S++
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDD

TrEMBL top hitse value%identityAlignment
A0A1S3CAQ0 RNA polymerase II C-terminal domain phosphatase-like2.4e-1258.89Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        MS+ TNSPAHSSSSDDFAAFL V LDSHSSDSSPDE+ EGDNN  ESER++R      R   KLE S+D+   V+    +V++K   C+H
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

A0A5A7T8Q9 RNA polymerase II C-terminal domain phosphatase-like1.8e-1255.79Show/hide
Query:  MKFNWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        ++   MS+ TNSPAHSSSSDDFAAFL V LDSHSSDSSPDE+ EGDNN  ESER++R      R   KLE S+D+   V+    +V++K   C+H
Subjt:  MKFNWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

A0A6J1BUF9 RNA polymerase II C-terminal domain phosphatase-like7.5e-1461.11Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R  R++       E  +D+   V+    +V++K   C+H
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

A0A6J1BV42 RNA polymerase II C-terminal domain phosphatase-like7.5e-1461.11Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R  R++       E  +D+   V+    +V++K   C+H
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDL---VDRDVRQVVNK---CNH

A0A6J1CJQ5 RNA polymerase II C-terminal domain phosphatase-like4.4e-1459.57Show/hide
Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDLVDRDVRQVVNKCNHGVSAQKKLLG
        MS+VT+SPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER++R      R   KLE S++    D+   V + +  V ++++L G
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDLVDRDVRQVVNKCNHGVSAQKKLLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAAGAAAGAGAAAAGCCCTAACAGCTCCACGCCAGTTCTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGCTGCCGCCGCCATCATCGCG
TCTTTCTTCCAATCGTGCCTCCGCAGCCTCCCTCCCATCTCCGGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGACAGCAAGTTCTTCCAGTGGCGGTTTTGTTTC
CGTGTGTTTCCGGCTATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGTGGGTTGTGAGCTCGCGCGGGGTACGTTTTCCGGCAGTATTGGCGCGTTTCTGGCA
ACTCCTTCGCAACAGCAGCTTTACTTCGCGAGTTCCGGCGGTTTGAGCTATTTGGAGGTCGTATCGTGGAAATTGGATCGAATTAGAATCCAACCAGCAAGCATGAAGTT
TAATTGGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGATGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCATCGCCCG
ATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGGTCAGGCGGTTGTTCCGTGAGATTAGTCGAGGTGCGCTTAAGCTGGAACTATCGGATGATTTAGTT
GACAGAGATGTGAGGCAGGTTGTGAATAAATGCAATCATGGAGTTAGTGCTCAGAAAAAGCTTTTAGGACGAGGAAGAGAACAACACGATGACTACTTATGGAAGTCTTC
CCAAGTAACCATGGTTCTCTCCGATGACCTCTCTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAAGAAAGAGAAAAGCCCTAACAGCTCCACGCCAGTTCTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGCTGCCGCCGCCATCATCGCG
TCTTTCTTCCAATCGTGCCTCCGCAGCCTCCCTCCCATCTCCGGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGACAGCAAGTTCTTCCAGTGGCGGTTTTGTTTC
CGTGTGTTTCCGGCTATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGTGGGTTGTGAGCTCGCGCGGGGTACGTTTTCCGGCAGTATTGGCGCGTTTCTGGCA
ACTCCTTCGCAACAGCAGCTTTACTTCGCGAGTTCCGGCGGTTTGAGCTATTTGGAGGTCGTATCGTGGAAATTGGATCGAATTAGAATCCAACCAGCAAGCATGAAGTT
TAATTGGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGATGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCATCGCCCG
ATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGGTCAGGCGGTTGTTCCGTGAGATTAGTCGAGGTGCGCTTAAGCTGGAACTATCGGATGATTTAGTT
GACAGAGATGTGAGGCAGGTTGTGAATAAATGCAATCATGGAGTTAGTGCTCAGAAAAAGCTTTTAGGACGAGGAAGAGAACAACACGATGACTACTTATGGAAGTCTTC
CCAAGTAACCATGGTTCTCTCCGATGACCTCTCTGGTTAG
Protein sequenceShow/hide protein sequence
MNKRKRKALTAPRQFFSSSRRLILRFSRSLLPPPSSRLSSNRASAASLPSPASCACVRRRQQRQQVLPVAVLFPCVSGYPSGSDVISSQPTVGCELARGTFSGSIGAFLA
TPSQQQLYFASSGGLSYLEVVSWKLDRIRIQPASMKFNWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERVRRLFREISRGALKLELSDDLV
DRDVRQVVNKCNHGVSAQKKLLGRGREQHDDYLWKSSQVTMVLSDDLSG