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Lag0039597 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039597
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:47017148..47017735
RNA-Seq ExpressionLag0039597
SyntenyLag0039597
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]6.8e-1138.94Show/hide
Query:  KLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIK---MVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLSETKLITDA
        KLNS ASWS++ G+GG+ WV+HDS GS IC    +  +KW VK LE KAM+EG+K   ++ +T  ++  P+      +E+  +L  +  DL E   + D 
Subjt:  KLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIK---MVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLSETKLITDA

Query:  ISKLVSKMNVVSF
        I  L     ++SF
Subjt:  ISKLVSKMNVVSF

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.7e-1233.81Show/hide
Query:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLS
        A W  P SN WKLN++A+W      GG+ W++ D  G  I  S      +  +  LE  A+ EG++ +      +  P+ +ESDS+E I +L    +D +
Subjt:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLS

Query:  ETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA
        E   + + I +++  M +VS  H SR AN VAH +A  A
Subjt:  ETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]1.5e-1036.91Show/hide
Query:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLE-GIKMVVDTCVHNQIPLEVESDSMEVIFVLL
        ++L     WT P  + WKLN DA+W D    GGL W+V DS G  I    L        KAL     LE GIK            +E+ESD +EV+ ++ 
Subjt:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLE-GIKMVVDTCVHNQIPLEVESDSMEVIFVLL

Query:  GSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNF
         S   L+E  LI + I K +  + +  F H    AN VAH IA  AC F
Subjt:  GSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.6e-1231.67Show/hide
Query:  SQSKRPRSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEV
        S S   ++L ++  W  P  + W LN+DASWSD   RGG+ W++    G  +            VK LEA A+LEG++ + +  V    PL +E+DS EV
Subjt:  SQSKRPRSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEV

Query:  IFVLLGSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNFESGDASPENISRESGQFFWAPFFPLW
          +L    EDL++T  + + I  L     +++F    R  N  AH +A  A           ++ RES    W   FP W
Subjt:  IFVLLGSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNFESGDASPENISRESGQFFWAPFFPLW

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-1234.72Show/hide
Query:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMV-VDTCVHNQ----IPLEVESDSMEVIFVLLGS
        A W  P SN WKLN+DA+W      GG+ W++ D  G  I         +  +  LE  A+ EG++ +  + C   Q     P+ +ESDS+E I +L   
Subjt:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMV-VDTCVHNQ----IPLEVESDSMEVIFVLLGS

Query:  VEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA
         +D +E   + + I +++  M +VS  H SR AN VAHD+A  A
Subjt:  VEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA

TrEMBL top hitse value%identityAlignment
A0A5B7BU49 RNase H domain-containing protein (Fragment)1.4e-0935.17Show/hide
Query:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLG
        R  V    W+ P+   +KLN  ASW   +  GG+  V+ D  G  I     Q      +   EA A+L G+    D  + +   L VE D + V+  +  
Subjt:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLG

Query:  SVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA
        SVEDLSE   + D I +     +   FGH  R+ANSVAH+IA FA
Subjt:  SVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA

A0A6J1CP26 uncharacterized protein LOC1110134121.3e-1233.81Show/hide
Query:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLS
        A W  P SN WKLN++A+W      GG+ W++ D  G  I  S      +  +  LE  A+ EG++ +      +  P+ +ESDS+E I +L    +D +
Subjt:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLGSVEDLS

Query:  ETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA
        E   + + I +++  M +VS  H SR AN VAH +A  A
Subjt:  ETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA

A0A6J1D4B6 uncharacterized protein LOC1110171817.3e-1136.91Show/hide
Query:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLE-GIKMVVDTCVHNQIPLEVESDSMEVIFVLL
        ++L     WT P  + WKLN DA+W D    GGL W+V DS G  I    L        KAL     LE GIK            +E+ESD +EV+ ++ 
Subjt:  RSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLE-GIKMVVDTCVHNQIPLEVESDSMEVIFVLL

Query:  GSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNF
         S   L+E  LI + I K +  + +  F H    AN VAH IA  AC F
Subjt:  GSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNF

A0A6J1DNV9 uncharacterized protein LOC1110224031.7e-1231.67Show/hide
Query:  SQSKRPRSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEV
        S S   ++L ++  W  P  + W LN+DASWSD   RGG+ W++    G  +            VK LEA A+LEG++ + +  V    PL +E+DS EV
Subjt:  SQSKRPRSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEV

Query:  IFVLLGSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNFESGDASPENISRESGQFFWAPFFPLW
          +L    EDL++T  + + I  L     +++F    R  N  AH +A  A           ++ RES    W   FP W
Subjt:  IFVLLGSVEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNFESGDASPENISRESGQFFWAPFFPLW

A0A6J1DSV1 uncharacterized protein LOC1110236086.0e-1334.72Show/hide
Query:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMV-VDTCVHNQ----IPLEVESDSMEVIFVLLGS
        A W  P SN WKLN+DA+W      GG+ W++ D  G  I         +  +  LE  A+ EG++ +  + C   Q     P+ +ESDS+E I +L   
Subjt:  ASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMV-VDTCVHNQ----IPLEVESDSMEVIFVLLGS

Query:  VEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA
         +D +E   + + I +++  M +VS  H SR AN VAHD+A  A
Subjt:  VEDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCCCAATCGAAGAGGCCTAGGAGCCTTGTGAGTCAAGCGTCATGGACCCTTCCGAAGTCGAACCATTGGAAATTAAACTCTGATGCTTCTTGGAGCGACAAGAA
AGGAAGAGGGGGGTTAGACTGGGTGGTGCATGACTCGTCAGGATCCCCGATCTGCTTCAGTTGGCTGCAATTTCACCAAAAATGGGAGGTCAAAGCTTTGGAAGCCAAAG
CCATGCTCGAAGGGATTAAGATGGTAGTCGATACCTGTGTTCATAATCAAATTCCTCTGGAAGTGGAATCGGATTCGATGGAGGTAATTTTCGTGCTGCTGGGATCGGTT
GAAGACCTGTCGGAAACGAAGCTAATCACAGACGCCATCAGCAAGCTTGTGTCCAAGATGAACGTCGTCTCCTTCGGCCATTGCAGTAGGTCTGCGAACTCTGTTGCCCA
TGACATCGCAAATTTCGCTTGTAATTTTGAGTCAGGTGATGCTTCGCCTGAGAATATTTCGCGGGAATCAGGGCAATTTTTTTGGGCTCCTTTTTTCCCTCTCTGGTTCT
ACCCTACGTTTAATGAGGGTAGGAGGGTTTGTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCCCAATCGAAGAGGCCTAGGAGCCTTGTGAGTCAAGCGTCATGGACCCTTCCGAAGTCGAACCATTGGAAATTAAACTCTGATGCTTCTTGGAGCGACAAGAA
AGGAAGAGGGGGGTTAGACTGGGTGGTGCATGACTCGTCAGGATCCCCGATCTGCTTCAGTTGGCTGCAATTTCACCAAAAATGGGAGGTCAAAGCTTTGGAAGCCAAAG
CCATGCTCGAAGGGATTAAGATGGTAGTCGATACCTGTGTTCATAATCAAATTCCTCTGGAAGTGGAATCGGATTCGATGGAGGTAATTTTCGTGCTGCTGGGATCGGTT
GAAGACCTGTCGGAAACGAAGCTAATCACAGACGCCATCAGCAAGCTTGTGTCCAAGATGAACGTCGTCTCCTTCGGCCATTGCAGTAGGTCTGCGAACTCTGTTGCCCA
TGACATCGCAAATTTCGCTTGTAATTTTGAGTCAGGTGATGCTTCGCCTGAGAATATTTCGCGGGAATCAGGGCAATTTTTTTGGGCTCCTTTTTTCCCTCTCTGGTTCT
ACCCTACGTTTAATGAGGGTAGGAGGGTTTGTTGTTAG
Protein sequenceShow/hide protein sequence
MKSQSKRPRSLVSQASWTLPKSNHWKLNSDASWSDKKGRGGLDWVVHDSSGSPICFSWLQFHQKWEVKALEAKAMLEGIKMVVDTCVHNQIPLEVESDSMEVIFVLLGSV
EDLSETKLITDAISKLVSKMNVVSFGHCSRSANSVAHDIANFACNFESGDASPENISRESGQFFWAPFFPLWFYPTFNEGRRVCC