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Lag0039621 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039621
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationchr2:47493399..47495203
RNA-Seq ExpressionLag0039621
SyntenyLag0039621
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]5.4e-1733.53Show/hide
Query:  WELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN-------------------------FPHTAYNEMVVA----------
        W+ F   P SVNA +V+EFYANI K + + + VRG K+ ++ +AIN  ++LQ+                         F +T +N    +          
Subjt:  WELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN-------------------------FPHTAYNEMVVA----------

Query:  PSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKR
        P  +  +  ++ K++PT+H++TVS  R+LL  +I+ S  IDVG IIV ++  C  KK   L FPN IT LC++
Subjt:  PSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKR

KAE8712804.1 hypothetical protein F3Y22_tig00110223pilonHSYRG00028 [Hibiscus syriacus]8.4e-1835.1Show/hide
Query:  VPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----VAPSNEQLSDAVREKMLPTTHDSTVSRE
        V  H W+ F   P +VNA +V+EFY+NI + +   ++V G+ + ++P+AIN  + LQ        + V    + P  +  +  ++ K+LPT+H++TVS +
Subjt:  VPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----VAPSNEQLSDAVREKMLPTTHDSTVSRE

Query:  RVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGFQ
        R++L  +I+  L+ID+GKIIV +   C K+    L FPN IT L ++   Q
Subjt:  RVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGFQ

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]7.6e-1933.7Show/hide
Query:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------
        +A  +  H W+ FCA PE     +VREFYAN+       V VRGV+V WS  AINA++ L + P   ++E +                            
Subjt:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------

Query:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA
                + P+ +     ++  +LPTTH  TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A
Subjt:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]9.0e-2033.7Show/hide
Query:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------
        +A  +  H W+ FCA PE     +VREFYAN+   +   V VRGV+V WS  AINA++ L + P   ++E +                            
Subjt:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------

Query:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA
                + P+ +     ++ ++LPTTH  TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A
Subjt:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]4.9e-1832.45Show/hide
Query:  PSFSPLRLASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN--FPHTAYNEMVVAPSNEQLSDAV-------
        P   P  +A  +  H W+LFCA PE     +VREFY N+   D   V +RGV+V  S  AIN +++L +    H+ + E +  P    + + V       
Subjt:  PSFSPLRLASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN--FPHTAYNEMVVAPSNEQLSDAV-------

Query:  --------------------------REKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCK
                                  + ++LPTTH  TVS+E V L +++L   SI+VG++I  EI  C  +K G LFFP+ IT +C+
Subjt:  --------------------------REKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCK

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)3.7e-1933.7Show/hide
Query:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------
        +A  +  H W+ FCA PE     +VREFYAN+       V VRGV+V WS  AINA++ L + P   ++E +                            
Subjt:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------

Query:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA
                + P+ +     ++  +LPTTH  TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A
Subjt:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA

A0A2P5BCG4 Uncharacterized protein (Fragment)4.3e-2033.7Show/hide
Query:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------
        +A  +  H W+ FCA PE     +VREFYAN+   +   V VRGV+V WS  AINA++ L + P   ++E +                            
Subjt:  LASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----------------------------

Query:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA
                + P+ +     ++ ++LPTTH  TVS++R+LL  ++L   SI+VG++I +EI  C  +K G LFFP+ IT LC+ A
Subjt:  --------VAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRA

A0A2P5DAQ2 Uncharacterized protein2.4e-1832.45Show/hide
Query:  PSFSPLRLASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN--FPHTAYNEMVVAPSNEQLSDAV-------
        P   P  +A  +  H W+LFCA PE     +VREFY N+   D   V +RGV+V  S  AIN +++L +    H+ + E +  P    + + V       
Subjt:  PSFSPLRLASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN--FPHTAYNEMVVAPSNEQLSDAV-------

Query:  --------------------------REKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCK
                                  + ++LPTTH  TVS+E V L +++L   SI+VG++I  EI  C  +K G LFFP+ IT +C+
Subjt:  --------------------------REKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCK

A0A6A2WM54 Uncharacterized protein2.6e-1733.53Show/hide
Query:  WELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN-------------------------FPHTAYNEMVVA----------
        W+ F   P SVNA +V+EFYANI K + + + VRG K+ ++ +AIN  ++LQ+                         F +T +N    +          
Subjt:  WELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQN-------------------------FPHTAYNEMVVA----------

Query:  PSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKR
        P  +  +  ++ K++PT+H++TVS  R+LL  +I+ S  IDVG IIV ++  C  KK   L FPN IT LC++
Subjt:  PSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKR

A0A6A3B6J9 RT_RNaseH_2 domain-containing protein4.1e-1835.1Show/hide
Query:  VPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----VAPSNEQLSDAVREKMLPTTHDSTVSRE
        V  H W+ F   P +VNA +V+EFY+NI + +   ++V G+ + ++P+AIN  + LQ        + V    + P  +  +  ++ K+LPT+H++TVS +
Subjt:  VPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKVDWSPSAINALYNLQNFPHTAYNEMV----VAPSNEQLSDAVREKMLPTTHDSTVSRE

Query:  RVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGFQ
        R++L  +I+  L+ID+GKIIV +   C K+    L FPN IT L ++   Q
Subjt:  RVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTTTGTCGTCTGCGAACTCCGATTGCAATTGCGACTGGAAAATGTTGATTCTAAGTTCTTCTCCGATTAATGCCTTTCGACTAAGCAGGACAACGCAACACCT
ACCCGAAGACACGATCGAGAGGCGGACCATAAAGGATAGGCAAAGCAAAGGTGTTGGGCCAAGCTTCTCCCCTCTCCGGTTGGCTTCTAGTGTCCCTGACCACGGCTGGG
AATTGTTTTGTGCAAAGCCTGAGTCTGTAAACGCTCAGATGGTGCGCGAATTTTATGCTAATATTGACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTG
GACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCAGAATTTCCCCCACACAGCGTATAATGAGATGGTTGTAGCGCCATCTAATGAGCAGCTGAGTGATGCTGT
GCGGGAGAAGATGCTTCCAACGACTCATGACTCGACGGTCTCGAGGGAACGGGTTCTTCTGGCTTTCGCGATTTTGCAGTCTCTCAGCATTGATGTAGGGAAGATTATTG
TTAATGAGATTTCTGGTTGTTGGAAGAAGAAGGTGGGGAAGCTGTTTTTTCCAAATACTATTACCATGCTTTGTAAAAGAGCAGGGTTCCAGAGAATGAGGGAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTTTGTCGTCTGCGAACTCCGATTGCAATTGCGACTGGAAAATGTTGATTCTAAGTTCTTCTCCGATTAATGCCTTTCGACTAAGCAGGACAACGCAACACCT
ACCCGAAGACACGATCGAGAGGCGGACCATAAAGGATAGGCAAAGCAAAGGTGTTGGGCCAAGCTTCTCCCCTCTCCGGTTGGCTTCTAGTGTCCCTGACCACGGCTGGG
AATTGTTTTGTGCAAAGCCTGAGTCTGTAAACGCTCAGATGGTGCGCGAATTTTATGCTAATATTGACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTG
GACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCAGAATTTCCCCCACACAGCGTATAATGAGATGGTTGTAGCGCCATCTAATGAGCAGCTGAGTGATGCTGT
GCGGGAGAAGATGCTTCCAACGACTCATGACTCGACGGTCTCGAGGGAACGGGTTCTTCTGGCTTTCGCGATTTTGCAGTCTCTCAGCATTGATGTAGGGAAGATTATTG
TTAATGAGATTTCTGGTTGTTGGAAGAAGAAGGTGGGGAAGCTGTTTTTTCCAAATACTATTACCATGCTTTGTAAAAGAGCAGGGTTCCAGAGAATGAGGGAGATTTGA
Protein sequenceShow/hide protein sequence
MRILSSANSDCNCDWKMLILSSSPINAFRLSRTTQHLPEDTIERRTIKDRQSKGVGPSFSPLRLASSVPDHGWELFCAKPESVNAQMVREFYANIDKEDGFQVIVRGVKV
DWSPSAINALYNLQNFPHTAYNEMVVAPSNEQLSDAVREKMLPTTHDSTVSRERVLLAFAILQSLSIDVGKIIVNEISGCWKKKVGKLFFPNTITMLCKRAGFQRMREI