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Lag0039679 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039679
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr2:48270640..48272897
RNA-Seq ExpressionLag0039679
SyntenyLag0039679
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]9.8e-3757.62Show/hide
Query:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ
        ++ +R ++E     ++VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ +  AESSQT V+K  DKG  +VQ++QP Q S S+ASLS+QQ
Subjt:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ

Query:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        LQDMITN IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQPPKFQQFDGK
Subjt:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]3.7e-3656.95Show/hide
Query:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ
        ++ +R ++E     ++VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ +  AESSQT V+K  DKG  +VQ++QP Q S S+ASLS+QQ
Subjt:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ

Query:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        LQDMIT+ IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQPPKFQQFDGK
Subjt:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.7e-3656.95Show/hide
Query:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ
        ++ +R ++E     ++VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ +  AESSQT V+K  DKG  +VQ++QP Q S S+ASLS+QQ
Subjt:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ

Query:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        LQDMIT+ IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQPPKFQQFDGK
Subjt:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.7e-3656.95Show/hide
Query:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ
        ++ +R ++E     ++VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ +  AESSQT V+K  DKG  +VQ++QP Q S S+ASLS+QQ
Subjt:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ

Query:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        LQDMIT+ IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQPPKFQQFDGK
Subjt:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]9.8e-3757.62Show/hide
Query:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ
        ++ +R ++E     ++VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ +  AESSQT V+K  DKG  +VQ++QP Q S S+ASLS+QQ
Subjt:  TSHNRPIQEIIKPAVTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQP-QCSASIASLSIQQ

Query:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        LQDMITN IRAQYGGP+Q S +YSKPYTKRIDNLR P+GYQPPKFQQFDGK
Subjt:  LQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

TrEMBL top hitse value%identityAlignment
A0A5A7U5H1 Ty3-gypsy retrotransposon protein3.1e-3648.79Show/hide
Query:  RFRIQPTQDSEDHQANRPIKKINKSVDRSSKKINKPTGRSSKKINKPTGRDHPRRSTSHNRPIQEIIKPAV-TVMMTGTRTMEERMVEMQEHIDTLMKAI
        R R +  Q SED      +K I        ++I+KP          P   +H   S   N   +E+ +P + +VM+T   T E+RM E+++ ++ LMKA+
Subjt:  RFRIQPTQDSEDHQANRPIKKINKSVDRSSKKINKPTGRSSKKINKPTGRDHPRRSTSHNRPIQEIIKPAV-TVMMTGTRTMEERMVEMQEHIDTLMKAI

Query:  EEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK
        EEKD +I  LK+ IE++  AESS T  IKN +KG  I+Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGGP Q   LYSKPYTKRIDN+R P GYQPPK
Subjt:  EEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK

Query:  FQQFDGK
        FQQFDGK
Subjt:  FQQFDGK

A0A5A7U7I7 Ty3-gypsy retrotransposon protein6.9e-3656.46Show/hide
Query:  RPIQEIIKPAV-TVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDM
        R  +E+ +P + +VM+T   T E+RM E++++++ LMKA++E+D +I  LK+ IE++  AESS    IKN +KG  I+Q+ QPQ S SIASLS+QQLQ++
Subjt:  RPIQEIIKPAV-TVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDM

Query:  ITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        I N I+ QYGGP Q   LYSKPYTKRIDN+R P GYQPPKFQQFDGK
Subjt:  ITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

A0A5A7UXF0 Ty3-gypsy retrotransposon protein9.0e-3658.82Show/hide
Query:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG
        ++VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ IE++  AESS   ++KN DKG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGG
Subjt:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG

Query:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        P Q   LYSKPYTKRIDNLR P GYQPPKFQQFDGK
Subjt:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

A0A5A7V2W9 Ty3-gypsy retrotransposon protein1.8e-3660.29Show/hide
Query:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG
        ++VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ IE+   AESS    +KN DKG  ++Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGG
Subjt:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG

Query:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        PTQ   LYSKPYTKRIDNLR P GYQPPKFQQFDGK
Subjt:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

A0A5A7V3R7 Ty3-gypsy retrotransposon protein4.0e-3660.29Show/hide
Query:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG
        ++VM+T   T E RMVE++E ++ LMK +EE+D +I  LK+ IE++  AESS    +KN DKG  ++Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGG
Subjt:  VTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGG

Query:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK
        P Q   LYSKPYTKRI NLR P GYQPPKFQQFDGK
Subjt:  PTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGGGGATTCAGATTCGGAGATTCAAATCAGAAAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTCAGAAGA
TCCAAGATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGTAGACCGATCATCCAAGAAGATCAACAAGC
CAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGAGATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGTGACT
GTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACT
AAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCGCGACAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTG
CTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTAT
ACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTTGTTGAGACA
TGCGAGAACGCTGGTACTCGAGGGGACCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGGGGATTCAGATTCGGAGATTCAAATCAGAAAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTCAGAAGA
TCCAAGATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGTAGACCGATCATCCAAGAAGATCAACAAGC
CAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGAGATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGTGACT
GTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACT
AAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCGCGACAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTG
CTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTAT
ACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTTGTTGAGACA
TGCGAGAACGCTGGTACTCGAGGGGACCTACTAG
Protein sequenceShow/hide protein sequence
MTRGFRFGDSNQKTQSPENSARVQSHQKSESLENSEDPRFRIQPTQDSEDHQANRPIKKINKSVDRSSKKINKPTGRSSKKINKPTGRDHPRRSTSHNRPIQEIIKPAVT
VMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVIKNRDKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPY
TKRIDNLRTPIGYQPPKFQQFDGKAILNNILPTLLRHARTLVLEGTY