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Lag0039698 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039698
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr2:48511344..48511655
RNA-Seq ExpressionLag0039698
SyntenyLag0039698
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047510.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-2767Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CRESTRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2666Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-2764Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        +QRQ+   +   MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC +LR   GL  TEIVD+EEMVAMFLH++AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2666Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-2767Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
TrEMBL top hitse value%identityAlignment
A0A5A7TWH8 Retrotransposon protein3.8e-2767Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CRESTRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
A0A5A7TXW1 Retrotransposon protein8.6e-2766Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
A0A5A7UUT3 Retrotransposon protein3.8e-2764Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        +QRQ+   +   MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAILC +LR   GL  TEIVD+EEMVAMFLH++AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
A0A5A7VHB0 Retrotransposon protein1.3e-2767Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
A0A5D3BDX0 Retrotransposon protein8.6e-2766Show/hide
Query:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
        SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Subjt:  SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGC
CTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGG
TAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGC
CTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGG
TAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG
Protein sequenceShow/hide protein sequence
MADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR