; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039700 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039700
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr2:48548786..48550381
RNA-Seq ExpressionLag0039700
SyntenyLag0039700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW23101.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-2555.24Show/hide
Query:  KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA
        KA    M A  + S+  G +L DP QY S+VGALQYCTITR D+SF+VNK CQF+Q+PT +HW  VK+++RYLK TT  GL    +  L  TAY D DW 
Subjt:  KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA

Query:  NCPDD
         CPDD
Subjt:  NCPDD

RVW25336.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]2.2e-2559.38Show/hide
Query:  GSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        G + S  DG  LPDP +YR +VGALQY T+TRLD++FAVNKACQF+  P+ VHW  +KRI+RYLK T  LGL    S  + L  Y+DADWA+CPDD
Subjt:  GSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

RVW56832.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]7.5e-2656.57Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M    +  + DG +L DP QY ++VG LQYCTITR D+SF++NK CQF+Q+PT +HW +VKR +RYLK TT  GLS   S  L LT YADA+W  CPDD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

RVW77515.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]4.0e-2757.66Show/hide
Query:  KELLNRSP----KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGP
        K+LL R+     KA    M    +FS+ +G +L DP QYR++VGALQYCTITR D+SF+VNK CQF+Q+PT +HW  VKR++RYLK TT  GLS   S  
Subjt:  KELLNRSP----KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGP

Query:  LSLTAYADADW
        L LTAYADADW
Subjt:  LSLTAYADADW

RVX22757.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]7.5e-2656.57Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M    +  + DG +L DP QY ++VG LQYCTITR D+SF++NK CQF+Q+PT +HW +VKR +RYLK TT  GLS   S  L LT YADA+W  CPDD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

TrEMBL top hitse value%identityAlignment
A0A438CIR2 Retrovirus-related Pol polyprotein from transposon RE16.2e-2655.24Show/hide
Query:  KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA
        KA    M A  + S+  G +L DP QY S+VGALQYCTITR D+SF+VNK CQF+Q+PT +HW  VK+++RYLK TT  GL    +  L  TAY D DW 
Subjt:  KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA

Query:  NCPDD
         CPDD
Subjt:  NCPDD

A0A438CQ65 Retrovirus-related Pol polyprotein from transposon RE21.1e-2559.38Show/hide
Query:  GSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        G + S  DG  LPDP +YR +VGALQY T+TRLD++FAVNKACQF+  P+ VHW  +KRI+RYLK T  LGL    S  + L  Y+DADWA+CPDD
Subjt:  GSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

A0A438FA38 Retrovirus-related Pol polyprotein from transposon RE23.6e-2656.57Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M    +  + DG +L DP QY ++VG LQYCTITR D+SF++NK CQF+Q+PT +HW +VKR +RYLK TT  GLS   S  L LT YADA+W  CPDD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

A0A438GZ59 Retrovirus-related Pol polyprotein from transposon RE11.9e-2757.66Show/hide
Query:  KELLNRSP----KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGP
        K+LL R+     KA    M    +FS+ +G +L DP QYR++VGALQYCTITR D+SF+VNK CQF+Q+PT +HW  VKR++RYLK TT  GLS   S  
Subjt:  KELLNRSP----KANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGP

Query:  LSLTAYADADW
        L LTAYADADW
Subjt:  LSLTAYADADW

A0A438KNI0 Retrovirus-related Pol polyprotein from transposon RE23.6e-2656.57Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M    +  + DG +L DP QY ++VG LQYCTITR D+SF++NK CQF+Q+PT +HW +VKR +RYLK TT  GLS   S  L LT YADA+W  CPDD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1615.4e-1145.33Show/hide
Query:  YRSLVGALQY-CTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA
        Y S VGA+ Y   +TR DL+ AV    QF   P   HW  +KR++RYL+ST   GL    +G   L  Y+DADWA
Subjt:  YRSLVGALQY-CTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWA

P92519 Uncharacterized mitochondrial protein AtMg008101.3e-1740.18Show/hide
Query:  NQKELLNRSPKANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLS
        N   +L+  P +    +   SS S+      PDP  +RS+VGALQY T+TR D+S+AVN  CQ +  PT+  ++L+KR++RY+K T   GL +  +  L+
Subjt:  NQKELLNRSPKANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLS

Query:  LTAYADADWANC
        + A+ D+DWA C
Subjt:  LTAYADADWANC

P93290 Uncharacterized mitochondrial protein AtMg002406.0e-1044.93Show/hide
Query:  YCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD
        Y TITR DL+FAVN+  QF  A        V +++ Y+K T   GL    +  L L A+AD+DWA+CPD
Subjt:  YCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.0e-1846.46Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M      S   G  L DP +YR +VG+LQY   TR D+S+AVN+  QF+  PT  H   +KRI+RYL  T + G+ L     LSL AY+DADWA   DD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.9e-2047.47Show/hide
Query:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD
        M      +   G  LPDP +YR +VG+LQY   TR DLS+AVN+  Q++  PT  HWN +KR++RYL  T   G+ L     LSL AY+DADWA   DD
Subjt:  MVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.8e-1641.94Show/hide
Query:  SFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD
        +FS+  G    D K YR L+G L Y  ITRLD+SFAVNK  QF +AP + H   V +I+ Y+K T   GL       + L  ++DA + +C D
Subjt:  SFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD

ATMG00240.1 Gag-Pol-related retrotransposon family protein4.3e-1144.93Show/hide
Query:  YCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD
        Y TITR DL+FAVN+  QF  A        V +++ Y+K T   GL    +  L L A+AD+DWA+CPD
Subjt:  YCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPD

ATMG00810.1 DNA/RNA polymerases superfamily protein9.5e-1940.18Show/hide
Query:  NQKELLNRSPKANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLS
        N   +L+  P +    +   SS S+      PDP  +RS+VGALQY T+TR D+S+AVN  CQ +  PT+  ++L+KR++RY+K T   GL +  +  L+
Subjt:  NQKELLNRSPKANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWNLVKRIIRYLKSTTHLGLSLIDSGPLS

Query:  LTAYADADWANC
        + A+ D+DWA C
Subjt:  LTAYADADWANC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTATAATGAGCGTCTCGACACTGTAGCGTCTCAACTCCTTCTAAGGCTGGAGGATAGCGGGGAAGACACTAGAGGTGGTCCACACACCGTTCGTGCTCAAAGGAA
TCAAAAGGAGTTGCTGAATCGGTCTCCAAAAGCCAATGGCAACTCTATGGTGGCTGGTTCTTCATTTTCTTCTCAAGATGGTGAGGTATTGCCTGATCCCAAGCAATATA
GGAGTCTTGTTGGAGCCCTCCAATACTGCACTATCACCAGACTCGATCTTAGCTTCGCAGTAAACAAGGCCTGCCAGTTTCTTCAAGCTCCCACTGTTGTGCACTGGAAT
TTAGTTAAGAGGATCATTCGGTACCTGAAGTCCACAACCCATCTTGGTTTATCCCTTATTGATTCTGGTCCTCTATCTTTGACAGCATATGCGGACGCTGACTGGGCAAA
TTGCCCAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTATAATGAGCGTCTCGACACTGTAGCGTCTCAACTCCTTCTAAGGCTGGAGGATAGCGGGGAAGACACTAGAGGTGGTCCACACACCGTTCGTGCTCAAAGGAA
TCAAAAGGAGTTGCTGAATCGGTCTCCAAAAGCCAATGGCAACTCTATGGTGGCTGGTTCTTCATTTTCTTCTCAAGATGGTGAGGTATTGCCTGATCCCAAGCAATATA
GGAGTCTTGTTGGAGCCCTCCAATACTGCACTATCACCAGACTCGATCTTAGCTTCGCAGTAAACAAGGCCTGCCAGTTTCTTCAAGCTCCCACTGTTGTGCACTGGAAT
TTAGTTAAGAGGATCATTCGGTACCTGAAGTCCACAACCCATCTTGGTTTATCCCTTATTGATTCTGGTCCTCTATCTTTGACAGCATATGCGGACGCTGACTGGGCAAA
TTGCCCAGATGATTGA
Protein sequenceShow/hide protein sequence
MLYNERLDTVASQLLLRLEDSGEDTRGGPHTVRAQRNQKELLNRSPKANGNSMVAGSSFSSQDGEVLPDPKQYRSLVGALQYCTITRLDLSFAVNKACQFLQAPTVVHWN
LVKRIIRYLKSTTHLGLSLIDSGPLSLTAYADADWANCPDD