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Lag0039737 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039737
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:49123343..49126769
RNA-Seq ExpressionLag0039737
SyntenyLag0039737
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]1.2e-1137.38Show/hide
Query:  LGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENC----SKMDYGVELRS
        LGN  G F   E D+N    G  L V+V +D++KPLRRG  ++ GS     W+   Y +LPDFC++C K+GH +++C E+  +       + +YG  LR 
Subjt:  LGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENC----SKMDYGVELRS

Query:  TQGSKGF
            K F
Subjt:  TQGSKGF

TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]4.5e-1130.53Show/hide
Query:  ENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSE----NCSKMDYGVELRSTQGSKGFYKGKKPE
        ++R+  G+ + VKV +D+ K LRR + +K G   + T + + YE+LP+FCY C ++GH + EC +  +      C+   YG  L++  G K +Y+     
Subjt:  ENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSE----NCSKMDYGVELRSTQGSKGFYKGKKPE

Query:  FREPSHRGRGREGIKLKESMTGKAIEGNRII
        +   S RGR  EG +  E     ++ G  ++
Subjt:  FREPSHRGRGREGIKLKESMTGKAIEGNRII

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.5e-1140.95Show/hide
Query:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSK-MDYGVELRS
        A  LGN+IG FE  ES+ N    G  L V+V+ D+ KPL RG+ +         WI + YE+LPDF Y C +L H++ +C +   ++ SK + YG  LR 
Subjt:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSK-MDYGVELRS

Query:  TQGSK
         QG K
Subjt:  TQGSK

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.1e-1239.32Show/hide
Query:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE------EDGSENCSKMDYG
        AI LGN+IG+F   + +E     G +L ++V +D+ KPLRRG+ I         WI + YE+LPDFCYFC  +GH   +C+      +D S   S  +YG
Subjt:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE------EDGSENCSKMDYG

Query:  VELRSTQGSKGFYKGKK
          LR      G  KG+K
Subjt:  VELRSTQGSKGFYKGKK

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]4.5e-1136.08Show/hide
Query:  GLWKYAIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSKMD
        G +K    +GN IG  E  + +++    GE L ++V++++ +PL RG+ +K G      WI+  YE+LP+FCY C KLGH   +CE +G++     D
Subjt:  GLWKYAIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSKMD

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein4.6e-1453.01Show/hide
Query:  KYAIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE
        KY +AL NSI SFE  E  E R+  GE L V+ K+D+ + L    +IK G+MA +  I VTYEKL DFCY C  LGHV+ ECE
Subjt:  KYAIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C5.7e-1237.38Show/hide
Query:  LGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENC----SKMDYGVELRS
        LGN  G F   E D+N    G  L V+V +D++KPLRRG  ++ GS     W+   Y +LPDFC++C K+GH +++C E+  +       + +YG  LR 
Subjt:  LGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENC----SKMDYGVELRS

Query:  TQGSKGF
            K F
Subjt:  TQGSKGF

A0A5C7HCW1 CCHC-type domain-containing protein2.2e-1130.53Show/hide
Query:  ENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSE----NCSKMDYGVELRSTQGSKGFYKGKKPE
        ++R+  G+ + VKV +D+ K LRR + +K G   + T + + YE+LP+FCY C ++GH + EC +  +      C+   YG  L++  G K +Y+     
Subjt:  ENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSE----NCSKMDYGVELRSTQGSKGFYKGKKPE

Query:  FREPSHRGRGREGIKLKESMTGKAIEGNRII
        +   S RGR  EG +  E     ++ G  ++
Subjt:  FREPSHRGRGREGIKLKESMTGKAIEGNRII

A0A6J1BSZ1 uncharacterized protein LOC1110054812.2e-1140.95Show/hide
Query:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSK-MDYGVELRS
        A  LGN+IG FE  ES+ N    G  L V+V+ D+ KPL RG+ +         WI + YE+LPDF Y C +L H++ +C +   ++ SK + YG  LR 
Subjt:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSK-MDYGVELRS

Query:  TQGSK
         QG K
Subjt:  TQGSK

A0A6J1DU55 uncharacterized protein LOC1110231351.5e-1239.32Show/hide
Query:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE------EDGSENCSKMDYG
        AI LGN+IG+F   + +E     G +L ++V +D+ KPLRRG+ I         WI + YE+LPDFCYFC  +GH   +C+      +D S   S  +YG
Subjt:  AIALGNSIGSFEMTESDENRKMTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECE------EDGSENCSKMDYG

Query:  VELRSTQGSKGFYKGKK
          LR      G  KG+K
Subjt:  VELRSTQGSKGFYKGKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAAGACTATCCTAAAGGAGATCCATGGCTCGACAGCTCTCCGTCACGCGTTCTGTACACCTTTACCTCTACCTGCAGTTGTATTGACGACGGTAATCAGATCCGA
GCGACGAAGAACAAACAGATCTGGACGCGGCGGCGGCGGCGTGCAAGATTGGCTAGCTGAACGTGGTGGCGGCAGCACTTCGAGAGACGGCGAACGACGACAGTTCACGA
CGACAGAAGGCGAGCGACAGGCGTCGGGCGGCGGGCTGTGGAAGTATGCCATTGCTCTAGGGAACTCCATTGGAAGCTTTGAAATGACAGAATCCGATGAAAATAGGAAG
ATGACGGGGGAGACCCTTTGGGTTAAAGTGAAAATGGACCTGCACAAACCGTTGAGAAGGGGGATGCATATCAAAACAGGATCGATGGCAGACCAAACGTGGATAAAAGT
CACTTACGAGAAGTTGCCGGATTTTTGTTACTTTTGTAGAAAATTGGGGCATGTGGTCTCAGAATGCGAAGAAGATGGAAGCGAAAACTGTAGTAAAATGGATTATGGTG
TGGAGCTGAGAAGCACTCAAGGAAGTAAGGGCTTCTACAAAGGGAAAAAACCTGAGTTCAGAGAGCCTAGCCACAGAGGGAGAGGCAGAGAAGGGATTAAGCTAAAGGAG
AGCATGACAGGTAAGGCAATAGAGGGAAATAGAATAATAGAGGCCAATAGCAAAGTGGGTAAAGAGAAAAGAAAAGAGCCATTAATCGAAAATGGGAAGGAGTGCACCAT
CACTAGTGAAGCGGGAAGGATGGATACAGAAAAGAAAAGGAATATCCAATCAGAAGGGAACAATCAAAATGAAGAGGCTAGGAAAGGGAATGATCAGGAAAGAATGCAGA
GGAAAATAGAGAAAATGGGATGTCCAGTGGGAAACCATAAGGAAAGCCAAAAGGAAAGGAAAAAAAAGATGATCACAAAGGAAAGAAGTGGAAAAGACTCGCCAGGACAG
AACATGGGATACACCAAAAGCCAGATAGTGACCAGTTGTTCAAAGAAGCATGAAGCAAGAGAGAGGCTGAGCAGGAAGCAAGAGGAAACAATACTGAAGAATTGGAGGGA
GGAAAGAACAAAAGAGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGAAGACTATCCTAAAGGAGATCCATGGCTCGACAGCTCTCCGTCACGCGTTCTGTACACCTTTACCTCTACCTGCAGTTGTATTGACGACGGTAATCAGATCCGA
GCGACGAAGAACAAACAGATCTGGACGCGGCGGCGGCGGCGTGCAAGATTGGCTAGCTGAACGTGGTGGCGGCAGCACTTCGAGAGACGGCGAACGACGACAGTTCACGA
CGACAGAAGGCGAGCGACAGGCGTCGGGCGGCGGGCTGTGGAAGTATGCCATTGCTCTAGGGAACTCCATTGGAAGCTTTGAAATGACAGAATCCGATGAAAATAGGAAG
ATGACGGGGGAGACCCTTTGGGTTAAAGTGAAAATGGACCTGCACAAACCGTTGAGAAGGGGGATGCATATCAAAACAGGATCGATGGCAGACCAAACGTGGATAAAAGT
CACTTACGAGAAGTTGCCGGATTTTTGTTACTTTTGTAGAAAATTGGGGCATGTGGTCTCAGAATGCGAAGAAGATGGAAGCGAAAACTGTAGTAAAATGGATTATGGTG
TGGAGCTGAGAAGCACTCAAGGAAGTAAGGGCTTCTACAAAGGGAAAAAACCTGAGTTCAGAGAGCCTAGCCACAGAGGGAGAGGCAGAGAAGGGATTAAGCTAAAGGAG
AGCATGACAGGTAAGGCAATAGAGGGAAATAGAATAATAGAGGCCAATAGCAAAGTGGGTAAAGAGAAAAGAAAAGAGCCATTAATCGAAAATGGGAAGGAGTGCACCAT
CACTAGTGAAGCGGGAAGGATGGATACAGAAAAGAAAAGGAATATCCAATCAGAAGGGAACAATCAAAATGAAGAGGCTAGGAAAGGGAATGATCAGGAAAGAATGCAGA
GGAAAATAGAGAAAATGGGATGTCCAGTGGGAAACCATAAGGAAAGCCAAAAGGAAAGGAAAAAAAAGATGATCACAAAGGAAAGAAGTGGAAAAGACTCGCCAGGACAG
AACATGGGATACACCAAAAGCCAGATAGTGACCAGTTGTTCAAAGAAGCATGAAGCAAGAGAGAGGCTGAGCAGGAAGCAAGAGGAAACAATACTGAAGAATTGGAGGGA
GGAAAGAACAAAAGAGCTCTAA
Protein sequenceShow/hide protein sequence
MRKTILKEIHGSTALRHAFCTPLPLPAVVLTTVIRSERRRTNRSGRGGGGVQDWLAERGGGSTSRDGERRQFTTTEGERQASGGGLWKYAIALGNSIGSFEMTESDENRK
MTGETLWVKVKMDLHKPLRRGMHIKTGSMADQTWIKVTYEKLPDFCYFCRKLGHVVSECEEDGSENCSKMDYGVELRSTQGSKGFYKGKKPEFREPSHRGRGREGIKLKE
SMTGKAIEGNRIIEANSKVGKEKRKEPLIENGKECTITSEAGRMDTEKKRNIQSEGNNQNEEARKGNDQERMQRKIEKMGCPVGNHKESQKERKKKMITKERSGKDSPGQ
NMGYTKSQIVTSCSKKHEARERLSRKQEETILKNWREERTKEL