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Lag0039738 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039738
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr2:49126837..49127391
RNA-Seq ExpressionLag0039738
SyntenyLag0039738
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR005135 - Endonuclease/exonuclease/phosphatase
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030922943.1 uncharacterized protein LOC115949807 [Quercus lobata]1.8e-4250.86Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YW
        M   CWN +G+GNPRT   LR  +R  NP+IVFLSETK    ++E+VK  L+F NG  VPS GR GGL +LW+ D +L I S+S+  ID +I  +D    
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YW

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        WRFT FYG    H R+ESW+LL  L S  +LPW   GDFNEIL   EK GG +R+   M+ FR  V+ CG  DLG
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

XP_030929385.1 uncharacterized protein LOC115955407 [Quercus lobata]2.4e-4247.7Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWW
        M+   WN RGLGNPR+ R LR+ V+  +P  VFLSETK     +ER K+++ F NG  +PS GR GGL +LW +++++ + SFS   ID +V ++  + W
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWW

Query:  RFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        R TGFYGNP  H+RKESWELL  L     LPW+  G+FNEI+   EK+GG  R+   M+ FR A++ C   DLG
Subjt:  RFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

XP_030967653.1 uncharacterized protein LOC115988147 [Quercus lobata]1.4e-4250.86Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YW
        M   CWN +G+GNPRT   LR  +R  NP++VFLSETK    ++E+VK  L F NG  VPS GR GGL +LW+ D  L I S+S   ID VI  S   + 
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD--YW

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        WRFTGFYG+P  H R++SW+LL  L S  + PW   GDFNEIL   EK GG  R+   M+ FR  V+ CG  DLG
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

XP_030970961.1 uncharacterized protein LOC115991405 [Quercus lobata]2.4e-4248.28Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWW
        M+   WN RGLGNP++ R LR+ V+  +P  VFLSETK     +ER K+++ F NG  +PS GR GGL +LW +++++ + SFS   ID +V ++  + W
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQID-VVIKNSDYWW

Query:  RFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        R TGFYGNP  H+RKESWELL  L     LPW+  GDFNEI+   EK+GG  R+   M+ FR A+D C   DLG
Subjt:  RFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

XP_042942727.1 uncharacterized protein LOC122276878 [Carya illinoinensis]1.2e-4449.14Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYW--
        MK+  WN RGLGNPRT REL   V+ ++PQ+VFLSETKC ++++E V+  L F N F V S+GR GGL ++WNE+L+ S+ S+S   I ++IK+ +    
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYW--

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        W  TGFYG+P   +RK  W++L  L+ + + PW+  GDFNE++   EK+GG ER +  MESFR A+D C L DLG
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

TrEMBL top hitse value%identityAlignment
A0A1U8HV94 uncharacterized protein LOC1078899121.3e-4148.57Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYW--
        MKI  WNVRGLGNPRT   LRH ++  NPQIVF  ETK  ++++ER++    F NG  V S G  GGL + W +D+ +S+ SFS   IDV+I+++D    
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYW--

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        WRFTGFYG+     R ESW+LL  L++   LPW V GDFNEI+   EK GG+ R    M++FR  + +C L D+G
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

A0A5B6UA53 Reverse transcriptase7.6e-4249.71Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNS--DYW
        MKI  WNVRGLGNPRT   L++++R  NP+I+FL ETK    K+E V++   F+NG  + SIG  GG+++ W  +L +S+ SFSS  +DV I ++  D  
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNS--DYW

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        WR TGFYGNP  + R ESW LL +L S+S+ PW+V GDFNEI  ++EK GG  R    M +FR+A+++C L DLG
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

A0A5B6UXQ7 Reverse transcriptase1.3e-4148Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIK--NSDYW
        MKI  WNVRGLG+PR  R LR+ ++ ++PQ+VFL ETK  + ++E+V++   F NG  + + G  GGL++ W EDL +++ SFSS  IDV++K  N D  
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIK--NSDYW

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
         RFTGFYG+P    + +SW LL +L  + + PW+V GDFNEIL + EK GG+ R    MESFR A++ C L D+G
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

A0A5B6VDW1 Reverse transcriptase1.3e-4146.29Show/hide
Query:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIK--NSDYW
        MK   WNVRGLG+PR  R LR+ ++ +NP +VFL ETK  +  +E+V+ +  F NG  + + G  GGL + W ED+ +++ SFS   IDV++K  N++  
Subjt:  MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIK--NSDYW

Query:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
        WRFTGFYG+P  + + +SW LL KL  + S PW+V GDFNEI+   EKVGG+ R+   ME+FR  +++C L D+G
Subjt:  WRFTGFYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

A0A5C7I5K8 DUF4283 domain-containing protein1.7e-4147.65Show/hide
Query:  CWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD-YWWRFTG
        CWNVRGLGNP T   L+  V+  +P ++FLSETK  +++ E+++ AL +  GF V SIG  GGL +LWNED ++S+ SFS G IDV I+  D  WW+F+G
Subjt:  CWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSD-YWWRFTG

Query:  FYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG
         YG P P+KR   W L+ +L+    LPW+  GDFNE+L   EK GG ++    +  FR  V++C L DLG
Subjt:  FYGNPVPHKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATATTCTGCTGGAATGTCCGGGGCTTGGGGAACCCCCGGACATTTCGAGAGCTTCGACATGAGGTCCGAAGCGAGAATCCTCAGATTGTCTTCTTGTCGGAGAC
TAAGTGCGGTCAGGATAAGATTGAGAGAGTGAAGGTGGCTTTGAACTTTGATAATGGCTTTAGTGTCCCAAGTATTGGCAGAGGTGGGGGCCTGACTATCTTGTGGAATG
AGGATCTCCACCTTTCTATTAGTTCTTTTTCGTCGGGGCAAATTGATGTGGTGATTAAAAATTCGGACTATTGGTGGAGATTTACAGGTTTTTACGGGAATCCAGTGCCT
CACAAGCGGAAAGAGTCGTGGGAGTTGTTAGGGAAGCTGAAGAGTAACTCGTCCCTCCCATGGATTGTGGGAGGAGACTTTAATGAAATCCTCTTGGCTATCGAGAAAGT
TGGTGGTGTAGAGAGAAACTATCTGCTTATGGAATCTTTTAGAGCAGCGGTGGACAACTGCGGTTTGTTTGATTTGGGCTCCCCCCTGATCCCTTTACATGGGCCAAAAA
TGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATATTCTGCTGGAATGTCCGGGGCTTGGGGAACCCCCGGACATTTCGAGAGCTTCGACATGAGGTCCGAAGCGAGAATCCTCAGATTGTCTTCTTGTCGGAGAC
TAAGTGCGGTCAGGATAAGATTGAGAGAGTGAAGGTGGCTTTGAACTTTGATAATGGCTTTAGTGTCCCAAGTATTGGCAGAGGTGGGGGCCTGACTATCTTGTGGAATG
AGGATCTCCACCTTTCTATTAGTTCTTTTTCGTCGGGGCAAATTGATGTGGTGATTAAAAATTCGGACTATTGGTGGAGATTTACAGGTTTTTACGGGAATCCAGTGCCT
CACAAGCGGAAAGAGTCGTGGGAGTTGTTAGGGAAGCTGAAGAGTAACTCGTCCCTCCCATGGATTGTGGGAGGAGACTTTAATGAAATCCTCTTGGCTATCGAGAAAGT
TGGTGGTGTAGAGAGAAACTATCTGCTTATGGAATCTTTTAGAGCAGCGGTGGACAACTGCGGTTTGTTTGATTTGGGCTCCCCCCTGATCCCTTTACATGGGCCAAAAA
TGTGA
Protein sequenceShow/hide protein sequence
MKIFCWNVRGLGNPRTFRELRHEVRSENPQIVFLSETKCGQDKIERVKVALNFDNGFSVPSIGRGGGLTILWNEDLHLSISSFSSGQIDVVIKNSDYWWRFTGFYGNPVP
HKRKESWELLGKLKSNSSLPWIVGGDFNEILLAIEKVGGVERNYLLMESFRAAVDNCGLFDLGSPLIPLHGPKM