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Lag0039739 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039739
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:49127415..49127891
RNA-Seq ExpressionLag0039739
SyntenyLag0039739
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4362342.1 hypothetical protein F8388_008226 [Cannabis sativa]6.3e-0727.5Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWA--NLPRAEVHSFSSKMGSCLAKLSKLN
        LDRF    +  ++F ++++ + +  +SD +P+VA L    V++Q+   K+  +F+  WL  +EC  IV++ W+  ++P     S     G C  +L   N
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWA--NLPRAEVHSFSSKMGSCLAKLSKLN

Query:  RTRLDGSLKATIKTKEEEIKSISSKNDAL-KDQKLRLAEKKLDALLEEEEACWKFRSRED
        + +  GS+   ++  ++++  + S    L +  +++  E  L+ LL  EE  WK RSR D
Subjt:  RTRLDGSLKATIKTKEEEIKSISSKNDAL-KDQKLRLAEKKLDALLEEEEACWKFRSRED

XP_010673168.1 PREDICTED: uncharacterized protein LOC104889608 [Beta vulgaris subsp. vulgaris]3.3e-0832.7Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTT-KFKGGWLAFDECKSIVHNHW---ANLPRAEVHSFSSKMGSCLAKLSK
        LDRF+A+ +  + F  + + H+ ++ SD  PI+ +L   G K +R   KK   +F   WL  D C+S+V   W   + LP      F +++G+    L  
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTT-KFKGGWLAFDECKSIVHNHW---ANLPRAEVHSFSSKMGSCLAKLSK

Query:  LNRTRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWKFRSR
         ++  L+  L   I   EEEIK +   + A   + L     KLD LLE++EA W  RSR
Subjt:  LNRTRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWKFRSR

XP_021836918.1 uncharacterized protein LOC110776679 [Spinacia oleracea]2.2e-0730.77Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT
        LDRF+A TE  N+F +  +RH   ++SD  PI   L+      +RG   K  KF+  WL+ +EC  +V + WA+    +      ++  C  +L+     
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT

Query:  RLDGSLKATIKTKEEEIKSISSKN-DALKDQKLRLAEKKLDALLEEEEACWKFRSR
           GS+K   K  EE++K   +++ DA   +   L   +LD L   EE+ W  R+R
Subjt:  RLDGSLKATIKTKEEEIKSISSKN-DALKDQKLRLAEKKLDALLEEEEACWKFRSR

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]4.5e-1337.5Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRG-VKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNR
        LDRF+  T +  I + ++IRHL    SD +PI+AE +  G   V R   ++  +F+  W +F ECK IV   WA         F  K+ SCL +L K N 
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRG-VKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNR

Query:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWK
         RL GSL+  I  KE EI+ +           L  A++ L+ LLEEEE  W+
Subjt:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWK

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]2.1e-1031.67Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT
        LDRF+    ++N   N+++ HL   +SD +PI+A       +      ++  +F+  WL  D C+ I+   W +LP   + +F +K+ SCL++L++ N+ 
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT

Query:  RLDGSLKATIKTKEEEIKSI
        RL+ SLK  I  KE+E++ +
Subjt:  RLDGSLKATIKTKEEEIKSI

TrEMBL top hitse value%identityAlignment
A0A2N9E147 Reverse transcriptase domain-containing protein8.0e-0829.3Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHW-ANLPRAEVHSFSSKMGSCLAKLSKLNR
        LDR + T + ++ F N +IRH++   SD   +V + +   +   R P  K  +F+  W+    C++++   W ++     ++    K+  C  +L + NR
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHW-ANLPRAEVHSFSSKMGSCLAKLSKLNR

Query:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQK-LRLAEKKLDALLEEEEACWKFRSR
        TR  G  K +I+ K   ++      D  ++++   L  K+L+ALLEEEEA W+ RSR
Subjt:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQK-LRLAEKKLDALLEEEEACWKFRSR

A0A2N9I2P8 Reverse transcriptase domain-containing protein8.0e-0828.66Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPR--AEVHSFSSKMGSCLAKLSKLN
        LDR +A+   V  +D+  + HL   NSD  P++ ++ S  + V+R   KK  +F+  W   ++C+ ++   W+   R  + +   + K+  C   L   +
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPR--AEVHSFSSKMGSCLAKLSKLN

Query:  RTRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWKFRSR
        + R  GSL A+IK K E+++  ++ + +    +L   + +L+ LLE+EE  W+ RSR
Subjt:  RTRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWKFRSR

A0A2N9I4S0 Uncharacterized protein6.1e-0829.3Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHW-ANLPRAEVHSFSSKMGSCLAKLSKLNR
        LDR + T + ++ F N +IRH++   SD   +V + +   +   R P  K  +F+  W+    C++++   W ++     ++    K+  C  +L + NR
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHW-ANLPRAEVHSFSSKMGSCLAKLSKLNR

Query:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQK-LRLAEKKLDALLEEEEACWKFRSR
        TR  G  K +I+ K   ++      D  ++++   L  K+L+ALLEEEEA W+ RSR
Subjt:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQK-LRLAEKKLDALLEEEEACWKFRSR

A0A6J1DRA0 uncharacterized protein LOC1110224232.2e-1337.5Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRG-VKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNR
        LDRF+  T +  I + ++IRHL    SD +PI+AE +  G   V R   ++  +F+  W +F ECK IV   WA         F  K+ SCL +L K N 
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRG-VKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNR

Query:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWK
         RL GSL+  I  KE EI+ +           L  A++ L+ LLEEEE  W+
Subjt:  TRLDGSLKATIKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWK

A0A6J1DUG8 uncharacterized protein LOC1110241351.0e-1031.67Show/hide
Query:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT
        LDRF+    ++N   N+++ HL   +SD +PI+A       +      ++  +F+  WL  D C+ I+   W +LP   + +F +K+ SCL++L++ N+ 
Subjt:  LDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRT

Query:  RLDGSLKATIKTKEEEIKSI
        RL+ SLK  I  KE+E++ +
Subjt:  RLDGSLKATIKTKEEEIKSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGATCGTTTTATGGCTACTACCGAGTTGGTAAACATCTTTGATAACATCCAGATCAGGCATCTAAACAAGCATAATTCCGACCCTAAGCCTATTGTGGCTGAGTT
GGTGAGTAGGGGGGTTAAGGTTCAGAGGGGTCCGACAAAGAAGACTACAAAATTCAAAGGAGGGTGGCTAGCTTTTGATGAGTGTAAGAGCATAGTCCATAACCATTGGG
CTAACCTCCCCAGAGCGGAAGTTCACAGTTTCAGCTCGAAGATGGGGTCCTGCTTAGCCAAGCTCAGTAAGTTGAACAGAACTAGATTGGATGGCTCCCTCAAGGCGACC
ATCAAGACAAAGGAAGAAGAGATTAAGTCCATTAGCAGTAAGAATGATGCCTTAAAGGATCAGAAGCTCAGATTGGCCGAGAAAAAGCTGGACGCTCTGTTAGAAGAGGA
AGAAGCCTGCTGGAAGTTCAGGTCAAGGGAAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGATCGTTTTATGGCTACTACCGAGTTGGTAAACATCTTTGATAACATCCAGATCAGGCATCTAAACAAGCATAATTCCGACCCTAAGCCTATTGTGGCTGAGTT
GGTGAGTAGGGGGGTTAAGGTTCAGAGGGGTCCGACAAAGAAGACTACAAAATTCAAAGGAGGGTGGCTAGCTTTTGATGAGTGTAAGAGCATAGTCCATAACCATTGGG
CTAACCTCCCCAGAGCGGAAGTTCACAGTTTCAGCTCGAAGATGGGGTCCTGCTTAGCCAAGCTCAGTAAGTTGAACAGAACTAGATTGGATGGCTCCCTCAAGGCGACC
ATCAAGACAAAGGAAGAAGAGATTAAGTCCATTAGCAGTAAGAATGATGCCTTAAAGGATCAGAAGCTCAGATTGGCCGAGAAAAAGCTGGACGCTCTGTTAGAAGAGGA
AGAAGCCTGCTGGAAGTTCAGGTCAAGGGAAGACTGA
Protein sequenceShow/hide protein sequence
MLDRFMATTELVNIFDNIQIRHLNKHNSDPKPIVAELVSRGVKVQRGPTKKTTKFKGGWLAFDECKSIVHNHWANLPRAEVHSFSSKMGSCLAKLSKLNRTRLDGSLKAT
IKTKEEEIKSISSKNDALKDQKLRLAEKKLDALLEEEEACWKFRSRED