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Lag0039741 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039741
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:49128685..49129095
RNA-Seq ExpressionLag0039741
SyntenyLag0039741
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU10142.1 hypothetical protein TSUD_420060, partial [Trifolium subterraneum]2.2e-3251.47Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CVESV YSVL+NG   +  KP RG+RQGDPLSPYLF+ CAEG+ AL+   +S   I+G++I ++ P ++HL FADD  +F++AN  EA  +K  L TY
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK
        E A+GQ I+ +KS    S NV       ISTTLGV+
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK

XP_019149681.1 PREDICTED: uncharacterized protein LOC109146487 [Ipomoea nil]2.8e-3251.85Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CV +VSYSVL+NG+  D+  P RG+RQGDPLSPYLF+ CAEG+  LL +  ++ +I+G R+++  P++THLFFADDSL F+KANT EA  VKR L  Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGV
        E+ +GQ ++  KS    S N       EI+  LGV
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGV

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.5e-3351.47Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        MNCVESV ++VL+NG P DEF P RG+RQGDPLSPYLF+ CAEG+ AL+N E+ +  I  ++I++ CP ++HLF+ADD L+F+KA+TG    +K  LE+Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERA-TGQKISLEKSICMTSANVEDRKAREISTTLGV
        E+A +GQ I+L+KS+ + S N +++    I   L V
Subjt:  ERA-TGQKISLEKSICMTSANVEDRKAREISTTLGV

XP_027150159.1 uncharacterized protein LOC113750373 [Coffea eugenioides]2.8e-3255.22Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CVESV YS  +NG  ++   P+RGIRQGDPLSPYLFL C+EG   LL+  +   Q  G++IS++ P LTHLFFADDSLIF KA+T  AE ++R LE Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG
        ER++GQ I+LEKS    S N+E  K  E+   LG
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG

XP_027174627.1 uncharacterized protein LOC113774270 [Coffea eugenioides]2.8e-3255.22Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CVESV YS  +NG  ++   P+RGIRQGDPLSPYLFL C+EG   LL+  +   Q  G++IS++ P LTHLFFADDSLIF KA+T  AE ++R LE Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG
        ER++GQ I+LEKS    S N+E  K  E+   LG
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG

TrEMBL top hitse value%identityAlignment
A0A1B5Z7R2 Reverse transcriptase domain-containing protein (Fragment)1.1e-3251.47Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CVESV YSVL+NG   +  KP RG+RQGDPLSPYLF+ CAEG+ AL+   +S   I+G++I ++ P ++HL FADD  +F++AN  EA  +K  L TY
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK
        E A+GQ I+ +KS    S NV       ISTTLGV+
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK

A0A2Z6NHQ6 Reverse transcriptase domain-containing protein5.2e-3250.74Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M CVESV YSVL+NG   +  KP RG+RQGDPLSPYLF+ C EG+ AL+   +S   I+G++I ++ P ++HL FADD  +F++AN  EA  +K  L TY
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK
        E A+GQ I+ +KS    S NV       ISTTLGV+
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLGVK

A0A6J1DUG8 uncharacterized protein LOC1110241357.3e-3451.47Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        MNCVESV ++VL+NG P DEF P RG+RQGDPLSPYLF+ CAEG+ AL+N E+ +  I  ++I++ CP ++HLF+ADD L+F+KA+TG    +K  LE+Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERA-TGQKISLEKSICMTSANVEDRKAREISTTLGV
        E+A +GQ I+L+KS+ + S N +++    I   L V
Subjt:  ERA-TGQKISLEKSICMTSANVEDRKAREISTTLGV

A0A6P6S9X2 uncharacterized protein LOC1136894218.9e-3251.13Show/hide
Query:  NCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYE
        +C+++VSYS   NG  +    P+RGIRQGDPLSPYLFL C+EG   LL R +   +I G++IS++ P LTHLFFADDS+IF KAN  EA  + + L+TYE
Subjt:  NCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYE

Query:  RATGQKISLEKSICMTSANVEDRKAREISTTLG
        +A+GQ ++L+KS    S N++D   +E+  TLG
Subjt:  RATGQKISLEKSICMTSANVEDRKAREISTTLG

A0A6P6USW2 uncharacterized protein LOC1137139438.9e-3253.73Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M C+ + SYS L+NG  ++   PQRGIRQGDPLSPYLFL C+EG   LL +  S+ +I G+ IS+  P LTHLFFADDSLIF KA++  A  +KR L  Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG
        ER TGQ I+LEKS  + S N++     E+S  LG
Subjt:  ERATGQKISLEKSICMTSANVEDRKAREISTTLG

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein4.0e-0528.93Show/hide
Query:  SVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYERATGQKIS
        ++ +NG   +    + G RQG PLSPYLF    E +LA   R+  Q +I GI+I K    ++ L  ADD +++          +   + ++    G KI+
Subjt:  SVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYERATGQKIS

Query:  LEKSICM--TSANVEDRKARE
          KS+    T     +++ RE
Subjt:  LEKSICM--TSANVEDRKARE

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM5.3e-0530.17Show/hide
Query:  NCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYE
        N  E    S+  +G   +EF P RG++QGDPLSP LF    + +L  L  E       G ++           FADD ++F +   G    + +TL+ + 
Subjt:  NCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYE

Query:  RATGQKISLEKSICMT
           G K++ +K  C T
Subjt:  RATGQKISLEKSICMT

P92555 Uncharacterized mitochondrial protein AtMg012505.1e-1651.47Show/hide
Query:  LLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDS
        ++NGAPQ    P RG+RQGDPLSPYLF+ C E +  L  R   Q ++ GIR+S + P + HL FADD+
Subjt:  LLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDS

Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)5.3e-0525.81Show/hide
Query:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY
        M+ +     ++++ G   ++   + G++QGDPLSP LF    + ++  LN E       G  ++  C  +  L FADD L+    +      +  T   Y
Subjt:  MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETY

Query:  ERATGQKISLEKSICMTSANVEDR
         R  G  ++ EK   +++A V  R
Subjt:  ERATGQKISLEKSICMTSANVEDR

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)3.6e-1751.47Show/hide
Query:  LLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDS
        ++NGAPQ    P RG+RQGDPLSPYLF+ C E +  L  R   Q ++ GIR+S + P + HL FADD+
Subjt:  LLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGTGTCGAGTCGGTCAGTTATTCGGTGCTCCTAAATGGGGCTCCCCAAGATGAATTCAAGCCTCAAAGGGGGATAAGGCAAGGAGACCCGCTCTCCCCTTACCT
TTTCCTCTTTTGCGCAGAAGGGATATTAGCTCTTCTTAACAGGGAAGATTCTCAAAACCAAATCTATGGCATTCGTATTAGTAAACACTGCCCTACGTTAACTCACCTCT
TTTTTGCAGATGACAGCTTAATTTTCTACAAGGCCAACACAGGAGAAGCAGAGAGGGTGAAAAGGACTCTTGAGACATACGAGAGGGCGACGGGACAAAAGATCAGCCTG
GAGAAATCAATATGTATGACTAGCGCAAACGTGGAGGATAGAAAGGCTAGGGAGATCAGCACGACTCTCGGGGTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTGTGTCGAGTCGGTCAGTTATTCGGTGCTCCTAAATGGGGCTCCCCAAGATGAATTCAAGCCTCAAAGGGGGATAAGGCAAGGAGACCCGCTCTCCCCTTACCT
TTTCCTCTTTTGCGCAGAAGGGATATTAGCTCTTCTTAACAGGGAAGATTCTCAAAACCAAATCTATGGCATTCGTATTAGTAAACACTGCCCTACGTTAACTCACCTCT
TTTTTGCAGATGACAGCTTAATTTTCTACAAGGCCAACACAGGAGAAGCAGAGAGGGTGAAAAGGACTCTTGAGACATACGAGAGGGCGACGGGACAAAAGATCAGCCTG
GAGAAATCAATATGTATGACTAGCGCAAACGTGGAGGATAGAAAGGCTAGGGAGATCAGCACGACTCTCGGGGTGAAATAG
Protein sequenceShow/hide protein sequence
MNCVESVSYSVLLNGAPQDEFKPQRGIRQGDPLSPYLFLFCAEGILALLNREDSQNQIYGIRISKHCPTLTHLFFADDSLIFYKANTGEAERVKRTLETYERATGQKISL
EKSICMTSANVEDRKAREISTTLGVK