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Lag0039754 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039754
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr2:49391709..49392512
RNA-Seq ExpressionLag0039754
SyntenyLag0039754
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]1.4e-2744.07Show/hide
Query:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD
        +SS +   S+ PA    PPPTS+ LP     N      P+PQ  NT      P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD
Subjt:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD

Query:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
          + Q NP F  WQ+YNR +MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Subjt:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]4.1e-2743.5Show/hide
Query:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD
        +SS +   S+ PA    PPPTS+ LP      + +   P+PQ  NT      P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD
Subjt:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD

Query:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
          + Q NP F  WQ+YNR +MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Subjt:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

PON47862.1 hypothetical protein TorRG33x02_321990 [Trema orientale]4.1e-2744.38Show/hide
Query:  NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYN
        + GNP    P PTN P                   P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A   VN  ++ WQ++N
Subjt:  NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYN

Query:  RTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
        R +MSWI +SL +  +G+I+G + AFEIWE L  +Y SSS A++  L ++LQ +RKDGL+
Subjt:  RTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.7e-2849.02Show/hide
Query:  SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICS
        ++L   P + N  P F SP  T   YP+L+ PL IKL +TN  LWKNQLLN IIA  +E FI G TP P KFLD A+ QVNPLF+ W++ N  +MSWI  
Subjt:  SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICS

Query:  SLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT
        SL    +G I+    A EIW  L  VY+S S   ++ L SQLQKI+K+G++++
Subjt:  SLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]6.0e-3448.12Show/hide
Query:  RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRT
        ++PPPT + L   P     NPF      +  P+PTL  PLN+KL+D N+LLWKNQLLN +IA  +  +++GT  PPP+FLD  + Q NP +  W++YNR 
Subjt:  RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRT

Query:  LMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT
        LM WI SSL+E+K+GE++      +IW  L  VY+S +TAR+MGL ++LQ +RKDG SV+
Subjt:  LMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT

TrEMBL top hitse value%identityAlignment
A0A2P5BGF8 Uncharacterized protein2.0e-2744.38Show/hide
Query:  NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYN
        + GNP    P PTN P                   P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G+ P PP+F D A   VN  ++ WQ++N
Subjt:  NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYN

Query:  RTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
        R +MSWI +SL +  +G+I+G + AFEIWE L  +Y SSS A++  L ++LQ +RKDGL+
Subjt:  RTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE11.8e-2849.02Show/hide
Query:  SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICS
        ++L   P + N  P F SP  T   YP+L+ PL IKL +TN  LWKNQLLN IIA  +E FI G TP P KFLD A+ QVNPLF+ W++ N  +MSWI  
Subjt:  SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICS

Query:  SLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT
        SL    +G I+    A EIW  L  VY+S S   ++ L SQLQKI+K+G++++
Subjt:  SLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT

A0A6J1DQX7 uncharacterized protein LOC1110223152.9e-3448.12Show/hide
Query:  RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRT
        ++PPPT + L   P     NPF      +  P+PTL  PLN+KL+D N+LLWKNQLLN +IA  +  +++GT  PPP+FLD  + Q NP +  W++YNR 
Subjt:  RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRT

Query:  LMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT
        LM WI SSL+E+K+GE++      +IW  L  VY+S +TAR+MGL ++LQ +RKDG SV+
Subjt:  LMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT

A0A7J0EGI5 Uncharacterized protein6.9e-2844.07Show/hide
Query:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD
        +SS +   S+ PA    PPPTS+ LP     N      P+PQ  NT      P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD
Subjt:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD

Query:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
          + Q NP F  WQ+YNR +MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Subjt:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

A0A7J0GPN0 UBX domain-containing protein2.0e-2743.5Show/hide
Query:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD
        +SS +   S+ PA    PPPTS+ LP      + +   P+PQ  NT      P++  PL +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD
Subjt:  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLD

Query:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS
          + Q NP F  WQ+YNR +MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Subjt:  AAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)2.8e-0524.11Show/hide
Query:  PLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKL-GEIIGCSIAFEIWEHLRTVYESSS
        P+ + + ++NY  W+   L H ++FD+   I+GT      L    + VN     WQK +  +   +  +L   +  G  +  S + +IW  ++  + ++ 
Subjt:  PLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKL-GEIIGCSIAFEIWEHLRTVYESSS

Query:  TARLMGLCSQLQ
         AR + L S+L+
Subjt:  TARLMGLCSQLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGTCTTCCAGTACCTCATCCACCGGCAATGACAACGTACCTGAGTTACCAGACCTACCCTCTTCCTCTATCAATACAACCATTCCTGTGACAGCTTTTGCCTC
CACTGTTACCACTCTACCGTCGACGCCTGTCAACCTCTCTCTGCGGCCAGGTGTGAATCCCTCCCAAAGACACAACACTTCCCCCAATCCCAAGTTTTCAGGCTTTCCCT
CTCGACCATTGAACCCTAATCAGCCTCTATTCTACTTGAATGTTAATCATCAGCCCTTTTCCTCTTCTTTTTCTTTTCCCCAGTCGTCTGTTCCAGCTGGGTTTCGATAT
CCTCCCCCCACCTCTTCTTCCTTGCCCTTCTTTCCTACTCACAACAATGGCAACCCTTTCTTTCCCTCTCCCCAGCCAACCAACACCCCCTACCCGACTCTCACACCGCC
GCTCAACATCAAACTCTCTGATACCAACTATTTACTCTGGAAGAATCAACTTCTTAATCATATTATTGCATTTGATATGGAAGCCTTCATCAATGGAACTCCTCCTCCTC
CGAAATTTCTGGATGCTGCTGAATCCCAGGTAAATCCCTTATTTCTTATCTGGCAAAAATATAATAGAACTTTGATGAGTTGGATCTGCTCCTCCCTGAATGAAGATAAG
CTAGGTGAGATTATTGGCTGCTCCATTGCGTTTGAAATATGGGAGCACCTCAGAACTGTGTATGAATCTTCTTCCACGGCTCGTCTTATGGGTCTTTGTTCTCAGCTTCA
GAAGATTCGTAAAGATGGTTTATCAGTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGTCTTCCAGTACCTCATCCACCGGCAATGACAACGTACCTGAGTTACCAGACCTACCCTCTTCCTCTATCAATACAACCATTCCTGTGACAGCTTTTGCCTC
CACTGTTACCACTCTACCGTCGACGCCTGTCAACCTCTCTCTGCGGCCAGGTGTGAATCCCTCCCAAAGACACAACACTTCCCCCAATCCCAAGTTTTCAGGCTTTCCCT
CTCGACCATTGAACCCTAATCAGCCTCTATTCTACTTGAATGTTAATCATCAGCCCTTTTCCTCTTCTTTTTCTTTTCCCCAGTCGTCTGTTCCAGCTGGGTTTCGATAT
CCTCCCCCCACCTCTTCTTCCTTGCCCTTCTTTCCTACTCACAACAATGGCAACCCTTTCTTTCCCTCTCCCCAGCCAACCAACACCCCCTACCCGACTCTCACACCGCC
GCTCAACATCAAACTCTCTGATACCAACTATTTACTCTGGAAGAATCAACTTCTTAATCATATTATTGCATTTGATATGGAAGCCTTCATCAATGGAACTCCTCCTCCTC
CGAAATTTCTGGATGCTGCTGAATCCCAGGTAAATCCCTTATTTCTTATCTGGCAAAAATATAATAGAACTTTGATGAGTTGGATCTGCTCCTCCCTGAATGAAGATAAG
CTAGGTGAGATTATTGGCTGCTCCATTGCGTTTGAAATATGGGAGCACCTCAGAACTGTGTATGAATCTTCTTCCACGGCTCGTCTTATGGGTCTTTGTTCTCAGCTTCA
GAAGATTCGTAAAGATGGTTTATCAGTGACTTAA
Protein sequenceShow/hide protein sequence
MASSSSTSSTGNDNVPELPDLPSSSINTTIPVTAFASTVTTLPSTPVNLSLRPGVNPSQRHNTSPNPKFSGFPSRPLNPNQPLFYLNVNHQPFSSSFSFPQSSVPAGFRY
PPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDK
LGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT