; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039774 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039774
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRING-CH-type domain-containing protein
Genome locationchr2:49660567..49661500
RNA-Seq ExpressionLag0039774
SyntenyLag0039774
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605546.1 Zinc finger CCCH domain-containing protein 24, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2873.39Show/hide
Query:  FDFWIFVGFMGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGP
        F  W+ VGFMGTEE+SVVS S    AD LQK    A TTE TS+VNHWK RNL LEIP+RTPDFVA RMPPTSSPTPRKVNFVLTP+S  DAI +G SGP
Subjt:  FDFWIFVGFMGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGP

Query:  SSSRGKSSI
        SSSR KSSI
Subjt:  SSSRGKSSI

XP_004145807.1 probable E3 ubiquitin-protein ligase MARCH10 isoform X2 [Cucumis sativus]8.2e-2677.42Show/hide
Query:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI
        +V+S SDGAV++ L KA DSA T       NHWK RNLFLEIP+RT DFVAI+MPPTSSPTPRKVNFVLTP SSDAIASGSSGPSSSRGKSSI
Subjt:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI

XP_011656994.1 probable E3 ubiquitin-protein ligase MARCH10 isoform X1 [Cucumis sativus]8.2e-2677.42Show/hide
Query:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI
        +V+S SDGAV++ L KA DSA T       NHWK RNLFLEIP+RT DFVAI+MPPTSSPTPRKVNFVLTP SSDAIASGSSGPSSSRGKSSI
Subjt:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI

XP_038901482.1 uncharacterized protein LOC120088334 isoform X1 [Benincasa hispida]5.7e-2776Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP--SSDAIASGSSGPSSSRGKSSI
        M   E +V+S SDG VAD LQKA DSA T       NHWK RNLFLEIP+RT DFVAI+MPPTSSPTPRKVNFVLTP  SSDAIASGSSGPSSSRGKSSI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP--SSDAIASGSSGPSSSRGKSSI

XP_038901484.1 uncharacterized protein LOC120088334 isoform X2 [Benincasa hispida]5.7e-2776Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP--SSDAIASGSSGPSSSRGKSSI
        M   E +V+S SDG VAD LQKA DSA T       NHWK RNLFLEIP+RT DFVAI+MPPTSSPTPRKVNFVLTP  SSDAIASGSSGPSSSRGKSSI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP--SSDAIASGSSGPSSSRGKSSI

TrEMBL top hitse value%identityAlignment
A0A0A0KAS0 RING-CH-type domain-containing protein4.0e-2677.42Show/hide
Query:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI
        +V+S SDGAV++ L KA DSA T       NHWK RNLFLEIP+RT DFVAI+MPPTSSPTPRKVNFVLTP SSDAIASGSSGPSSSRGKSSI
Subjt:  SVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTP-SSDAIASGSSGPSSSRGKSSI

A0A6J1H0Y8 uncharacterized protein LOC111459423 isoform X15.2e-2675Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI
        MGTEE+SVVS S    AD LQK    A TTEGTS+VNHWK RNL LEIP+RTPDFVA RMPPTSSPTPRKVNFVLTP+S  DAI +G SGPSSSR K SI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI

A0A6J1H134 uncharacterized protein LOC111459423 isoform X55.2e-2675Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI
        MGTEE+SVVS S    AD LQK    A TTEGTS+VNHWK RNL LEIP+RTPDFVA RMPPTSSPTPRKVNFVLTP+S  DAI +G SGPSSSR K SI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI

A0A6J1H263 uncharacterized protein LOC111459423 isoform X25.2e-2675Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI
        MGTEE+SVVS S    AD LQK    A TTEGTS+VNHWK RNL LEIP+RTPDFVA RMPPTSSPTPRKVNFVLTP+S  DAI +G SGPSSSR K SI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI

A0A6J1H436 uncharacterized protein LOC111459423 isoform X35.2e-2675Show/hide
Query:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI
        MGTEE+SVVS S    AD LQK    A TTEGTS+VNHWK RNL LEIP+RTPDFVA RMPPTSSPTPRKVNFVLTP+S  DAI +G SGPSSSR K SI
Subjt:  MGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSS--DAIASGSSGPSSSRGKSSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G60580.1 RING/U-box superfamily protein3.6e-1144.95Show/hide
Query:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS
        M TEE  ++ + LS    +    +A  S+  TE TS NV  W+ +NL L+IP+R       D V I+MPPT SPTPR+VNF LT SS     G +  SSS
Subjt:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS

Query:  ---RGKSSI
           RGKSS+
Subjt:  ---RGKSSI

AT5G60580.2 RING/U-box superfamily protein3.6e-1144.95Show/hide
Query:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS
        M TEE  ++ + LS    +    +A  S+  TE TS NV  W+ +NL L+IP+R       D V I+MPPT SPTPR+VNF LT SS     G +  SSS
Subjt:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS

Query:  ---RGKSSI
           RGKSS+
Subjt:  ---RGKSSI

AT5G60580.3 RING/U-box superfamily protein3.6e-1144.95Show/hide
Query:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS
        M TEE  ++ + LS    +    +A  S+  TE TS NV  W+ +NL L+IP+R       D V I+MPPT SPTPR+VNF LT SS     G +  SSS
Subjt:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS

Query:  ---RGKSSI
           RGKSS+
Subjt:  ---RGKSSI

AT5G60580.4 RING/U-box superfamily protein3.6e-1144.95Show/hide
Query:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS
        M TEE  ++ + LS    +    +A  S+  TE TS NV  W+ +NL L+IP+R       D V I+MPPT SPTPR+VNF LT SS     G +  SSS
Subjt:  MGTEE--MSVVSLSDGAVADCLQKARDSARTTEGTS-NVNHWKMRNLFLEIPART-----PDFVAIRMPPTSSPTPRKVNFVLTPSSDAIASGSSGPSSS

Query:  ---RGKSSI
           RGKSS+
Subjt:  ---RGKSSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAAATTGCTCCTTATCTCAAACCTCAGGGGGAGCAGATTTCTGGTTTTGATTTCTGGATTTTTGTTGGATTTATGGGAACGGAGGAGATGAGTGTTGTCAGTTT
AAGTGATGGAGCAGTTGCAGATTGCCTCCAGAAGGCTAGGGACTCAGCTAGGACAACAGAAGGAACCTCTAATGTTAACCATTGGAAGATGAGAAATCTTTTTCTTGAGA
TACCTGCTAGGACACCAGATTTTGTTGCAATAAGAATGCCCCCAACATCAAGTCCTACACCTAGGAAAGTGAATTTTGTGCTAACTCCTTCTTCAGATGCTATAGCTAGT
GGATCTTCAGGGCCATCTTCATCCAGAGGCAAATCGTCCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTCTCTTTCCAAAACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCAAATTGCTCCTTATCTCAAACCTCAGGGGGAGCAGATTTCTGGTTTTGATTTCTGGATTTTTGTTGGATTTATGGGAACGGAGGAGATGAGTGTTGTCAGTTT
AAGTGATGGAGCAGTTGCAGATTGCCTCCAGAAGGCTAGGGACTCAGCTAGGACAACAGAAGGAACCTCTAATGTTAACCATTGGAAGATGAGAAATCTTTTTCTTGAGA
TACCTGCTAGGACACCAGATTTTGTTGCAATAAGAATGCCCCCAACATCAAGTCCTACACCTAGGAAAGTGAATTTTGTGCTAACTCCTTCTTCAGATGCTATAGCTAGT
GGATCTTCAGGGCCATCTTCATCCAGAGGCAAATCGTCCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTCTCTTTCCAAAACGTAG
Protein sequenceShow/hide protein sequence
MDQIAPYLKPQGEQISGFDFWIFVGFMGTEEMSVVSLSDGAVADCLQKARDSARTTEGTSNVNHWKMRNLFLEIPARTPDFVAIRMPPTSSPTPRKVNFVLTPSSDAIAS
GSSGPSSSRGKSSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSLSKT