; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039779 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039779
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:49705081..49705653
RNA-Seq ExpressionLag0039779
SyntenyLag0039779
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045138.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.6e-1932.12Show/hide
Query:  VSSQESLWRKLITAKF---YSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIW
        +S   +LWR+LI  K+   Y  D     P  IS  + K+ W+ I   ID   S     L NG   SFW  +W     L ++YPRL+ L+     SV   W
Subjt:  VSSQESLWRKLITAKF---YSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIW

Query:  NLESQAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRS----LMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        N     W++  RR LN+ E  +WA +  +L             W+ D ++SF+  S    +   L  S G  R  L  +IWK   P KIK F+
Subjt:  NLESQAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRS----LMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.6e-1932.28Show/hide
Query:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES
        S   SLWR+LI  K+  +      P  IS  SSK+ W+ I + ID   S     L NG   SFW  +W     L ++YPRL+ LS     S+  +WN  +
Subjt:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES

Query:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL
          W++  RR LN+ E+  W  +   L +           W  D   SF+  S    + +    S    R  L  +IWK H P KIK F+
Subjt:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1831.75Show/hide
Query:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES
        S   SLWR+LI  K+  +      P  IS  SSK+ W+ I + ID   S     L NG   SFW  +W     L ++YPRL+ LS     S+  +WN  +
Subjt:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES

Query:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL
          W++  RR LN+ E+  W  +   L ++          W  D    F+  S    + +    S    R  L ++IWK H P KIK F+
Subjt:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL

VVA20721.1 Hypothetical predicted protein, partial [Prunus dulcis]1.7e-1935.87Show/hide
Query:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA
        +LW K+I +  Y  D   W  KP + GS +S W+ I S  ++        +G G    FW D W     LK  +PRL+ LS K   +++   +L+    +
Subjt:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA

Query:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        WD G RRNLNE EI E A L  LL  V +F +  D   W LDPS  FT  SL   +           ++ IWK   P K+KIF+
Subjt:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]1.5e-2648.18Show/hide
Query:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES
        S  ++L R  I AK+YS D  C WP PIS  S K+ W+ IC  I ++ SRI+  LG+G  TS W DSW     L + +PRLYRL+ +P  S+A +WN  S
Subjt:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES

Query:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDS
         AWDL LR NL E EI EW +LSH L  V   ++ DS
Subjt:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDS

TrEMBL top hitse value%identityAlignment
A0A5A7TQI1 LINE-1 retrotransposable element ORF2 protein3.2e-1932.12Show/hide
Query:  VSSQESLWRKLITAKF---YSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIW
        +S   +LWR+LI  K+   Y  D     P  IS  + K+ W+ I   ID   S     L NG   SFW  +W     L ++YPRL+ L+     SV   W
Subjt:  VSSQESLWRKLITAKF---YSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIW

Query:  NLESQAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRS----LMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        N     W++  RR LN+ E  +WA +  +L             W+ D ++SF+  S    +   L  S G  R  L  +IWK   P KIK F+
Subjt:  NLESQAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRS----LMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein4.2e-1932.28Show/hide
Query:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES
        S   SLWR+LI  K+  +      P  IS  SSK+ W+ I + ID   S     L NG   SFW  +W     L ++YPRL+ LS     S+  +WN  +
Subjt:  SSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES

Query:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL
          W++  RR LN+ E+  W  +   L +           W  D   SF+  S    + +    S    R  L  +IWK H P KIK F+
Subjt:  QAWDLGLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVY----SKGPTRNNLFSMIWKDHYPKKIKIFL

A0A5E4F237 zf-RVT domain-containing protein (Fragment)8.4e-2035.87Show/hide
Query:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA
        +LW K+I +  Y  D   W  KP + GS +S W+ I S  ++        +G G    FW D W     LK  +PRL+ LS K   +++   +L+    +
Subjt:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA

Query:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        WD G RRNLNE EI E A L  LL  V +F +  D   W LDPS  FT  SL   +           ++ IWK   P K+KIF+
Subjt:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

M5WJI4 zf-RVT domain-containing protein3.2e-1934.78Show/hide
Query:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA
        +LW K+I +  Y  D   W  KP + GS +S W+ I S  ++        +G G    FW D W     LK  +PRL+ LS K   +++    L+    +
Subjt:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA

Query:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        WD G RRNLNE EI E A L  LL  V +F +  D   W LDP   FT  S    +         + ++ IWK   P K+KIF+
Subjt:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

M5XTH8 zf-RVT domain-containing protein1.9e-1934.78Show/hide
Query:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA
        +LW K+I +  Y  D   W  KP + GS +S W+ I S  ++       ++G G    FW D W     LK  +PRL+ LS K   +++    L+    +
Subjt:  SLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLES--QA

Query:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL
        WD G RRNLNE EI E A L  LL  V +  +  D   W LDPS  FT  S    +         + ++ IWK   P K+KIF+
Subjt:  WDLGLRRNLNEEEILEWASLSHLL-SVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGAGGTTTCTTCTCAGGAGAGCCTTTGGCGAAAATTAATTACCGCAAAATTTTATTCTAGAGATGCATTATGTTGGTGGCCTAAACCCATCTCAGGTGGATC
CTCGAAATCTCTTTGGAAACATATTTGTAGCACCATTGATATTGTTGGTAGCCGTATTCAAAGGAGGCTTGGTAATGGAACACATACATCTTTTTGGAATGATTCGTGGC
CGGCTAGTATATCTCTCAAGTCTTCTTATCCTAGACTTTATCGTTTATCATCTAAACCTCTGGAATCAGTTGCTCAAATATGGAATTTAGAATCTCAAGCTTGGGATTTA
GGGCTTCGTCGAAATCTTAATGAGGAGGAAATTCTAGAATGGGCTAGTCTCTCACATCTCCTGTCGGTAGTTATTTTCAGGAATGCTCAAGATTCTTGGTATTGGCATCT
TGATCCCTCTCATTCATTTACAACTCGTTCCTTGATGGTGGATTTAGTCTATTCCAAGGGTCCAACCAGAAACAATCTCTTCTCGATGATTTGGAAGGATCATTACCCCA
AGAAGATAAAAATTTTCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATGGAGGTTTCTTCTCAGGAGAGCCTTTGGCGAAAATTAATTACCGCAAAATTTTATTCTAGAGATGCATTATGTTGGTGGCCTAAACCCATCTCAGGTGGATC
CTCGAAATCTCTTTGGAAACATATTTGTAGCACCATTGATATTGTTGGTAGCCGTATTCAAAGGAGGCTTGGTAATGGAACACATACATCTTTTTGGAATGATTCGTGGC
CGGCTAGTATATCTCTCAAGTCTTCTTATCCTAGACTTTATCGTTTATCATCTAAACCTCTGGAATCAGTTGCTCAAATATGGAATTTAGAATCTCAAGCTTGGGATTTA
GGGCTTCGTCGAAATCTTAATGAGGAGGAAATTCTAGAATGGGCTAGTCTCTCACATCTCCTGTCGGTAGTTATTTTCAGGAATGCTCAAGATTCTTGGTATTGGCATCT
TGATCCCTCTCATTCATTTACAACTCGTTCCTTGATGGTGGATTTAGTCTATTCCAAGGGTCCAACCAGAAACAATCTCTTCTCGATGATTTGGAAGGATCATTACCCCA
AGAAGATAAAAATTTTCCTCTAG
Protein sequenceShow/hide protein sequence
MDMEVSSQESLWRKLITAKFYSRDALCWWPKPISGGSSKSLWKHICSTIDIVGSRIQRRLGNGTHTSFWNDSWPASISLKSSYPRLYRLSSKPLESVAQIWNLESQAWDL
GLRRNLNEEEILEWASLSHLLSVVIFRNAQDSWYWHLDPSHSFTTRSLMVDLVYSKGPTRNNLFSMIWKDHYPKKIKIFL