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Lag0039805 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039805
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr13:139103..139759
RNA-Seq ExpressionLag0039805
SyntenyLag0039805
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]3.9e-0529.01Show/hide
Query:  HLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIF-----------IPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKD
        H R  E GRK+ IEER G R  +L++++GT AWVRDCL+A  +     +F           IP+G N  G  PL A                +  ++ + 
Subjt:  HLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIF-----------IPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKD

Query:  SGDGLIELGARNSKSFVEIVRKDSKK----GNEAIKKSPVVGELVFDCSSAVIIERVNIDIQ
          +G ++ G    K    +V+ D  K    G+   KK     +L  DC + VII+  +  ++
Subjt:  SGDGLIELGARNSKSFVEIVRKDSKK----GNEAIKKSPVVGELVFDCSSAVIIERVNIDIQ
TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]4.2e-0727Show/hide
Query:  KVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAIT--------------------------------------KGRKSFIFIPE
        K+ ID K F +      RK+ IEER G    +L++D GT AWVRDCL+                                         K RK+ IFIPE
Subjt:  KVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAIT--------------------------------------KGRKSFIFIPE

Query:  GPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKE
        G    GW  L   ++ LLP          G + +K    G +   A+N ++F  + +   ++ +E+ K      E  F+  S VII+++     W  +K+
Subjt:  GPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKE
TrEMBL top hitse value%identityAlignment
A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X21.9e-0529.01Show/hide
Query:  HLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIF-----------IPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKD
        H R  E GRK+ IEER G R  +L++++GT AWVRDCL+A  +     +F           IP+G N  G  PL A                +  ++ + 
Subjt:  HLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIF-----------IPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKD

Query:  SGDGLIELGARNSKSFVEIVRKDSKK----GNEAIKKSPVVGELVFDCSSAVIIERVNIDIQ
          +G ++ G    K    +V+ D  K    G+   KK     +L  DC + VII+  +  ++
Subjt:  SGDGLIELGARNSKSFVEIVRKDSKK----GNEAIKKSPVVGELVFDCSSAVIIERVNIDIQ
A0A5D3CQQ0 Uncharacterized protein2.0e-0727Show/hide
Query:  KVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAIT--------------------------------------KGRKSFIFIPE
        K+ ID K F +      RK+ IEER G    +L++D GT AWVRDCL+                                         K RK+ IFIPE
Subjt:  KVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAIT--------------------------------------KGRKSFIFIPE

Query:  GPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKE
        G    GW  L   ++ LLP          G + +K    G +   A+N ++F  + +   ++ +E+ K      E  F+  S VII+++     W  +K+
Subjt:  GPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGGTGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGGCGAGGATCAAGAATGATTCG
CTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAAAGGTT
GGGGGCCGCTTGAGGCAGCCATGACGGATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCCAGTTAAAGAGAAAGATAGTGGGGATGGCCTAATCGAG
TTAGGGGCTCGGAACTCTAAATCTTTTGTGGAAATAGTGAGAAAGGATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGGTTGTTGGGGAGCTTGTTTTCGATTG
TTCTTCTGCGGTCATCATCGAGAGGGTAAACATTGACATTCAGTGGATGGGTATAAAAGAAGAGTGCTTGAGATTTGGCCAAGATAGGGTTCATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGGTGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGGCGAGGATCAAGAATGATTCG
CTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAAAGGTT
GGGGGCCGCTTGAGGCAGCCATGACGGATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCCAGTTAAAGAGAAAGATAGTGGGGATGGCCTAATCGAG
TTAGGGGCTCGGAACTCTAAATCTTTTGTGGAAATAGTGAGAAAGGATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGGTTGTTGGGGAGCTTGTTTTCGATTG
TTCTTCTGCGGTCATCATCGAGAGGGTAAACATTGACATTCAGTGGATGGGTATAAAAGAAGAGTGCTTGAGATTTGGCCAAGATAGGGTTCATCCTTAA
Protein sequenceShow/hide protein sequence
MDRWKKVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIFIPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIE
LGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKEECLRFGQDRVHP