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Lag0039812 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039812
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description60S ribosomal protein L3
Genome locationchr13:169929..170867
RNA-Seq ExpressionLag0039812
SyntenyLag0039812
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006413 - translational initiation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR000597 - Ribosomal protein L3
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR044892 - Ribosomal protein L3, domain 3, archaeal type superfamily
IPR045077 - Ribosomal protein L3, archaeal/eukaryotic type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY94699.1 R-protein L3 B [Actinidia rufa]8.4e-1390.24Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSIS
        VKAFP+DDPSKPCRLTAFLGYKAGMTHIVREVEKPGSS  +
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSIS

KAB1208548.1 60S ribosomal protein L3 [Morella rubra]1.1e-1288.37Show/hide
Query:  FDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        F+    VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  FDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

RZC72189.1 hypothetical protein C5167_035362 [Papaver somniferum]8.4e-1384.09Show/hide
Query:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        +FD    VK+FP+DDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

RZC72298.1 hypothetical protein C5167_035501 [Papaver somniferum]1.1e-1282.22Show/hide
Query:  MQFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        +QFD    VK+FP+DD SKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  MQFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

RZC88821.1 hypothetical protein C5167_031192 [Papaver somniferum]8.4e-1384.09Show/hide
Query:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        +FD    VK+FP+DDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

TrEMBL top hitse value%identityAlignment
A0A4Y7KJQ5 Uncharacterized protein5.3e-1382.22Show/hide
Query:  MQFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        +QFD    VK+FP+DD SKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  MQFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

A0A4Y7KJR9 Uncharacterized protein4.1e-1384.09Show/hide
Query:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        +FD    VK+FP+DDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  QFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

A0A5D3CWM8 60S ribosomal protein L3-27.0e-13100Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

A0A6A1V9J6 60S ribosomal protein L35.3e-1388.37Show/hide
Query:  FDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        F+    VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
Subjt:  FDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

A0A7J0F928 R-protein L3 B4.1e-1390.24Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSIS
        VKAFP+DDPSKPCRLTAFLGYKAGMTHIVREVEKPGSS  +
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSIS

SwissProt top hitse value%identityAlignment
P17094 60S ribosomal protein L3-18.8e-1383.78Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DD +KPC+ TAF+GYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

P21531 60S ribosomal protein L31.1e-1253.42Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFICTGYNKIENANASTIPKIPDFV
        VK+FP+DDPSKP  LTAFLGYKAGMTHIVREV++PGS                  NK E   A TI + P  V
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFICTGYNKIENANASTIPKIPDFV

P22738 60S ribosomal protein L3-24.6e-1489.19Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DDP+KPCRLT+FLGYKAGMTHIVR+VEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

P39023 60S ribosomal protein L31.1e-1253.42Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFICTGYNKIENANASTIPKIPDFV
        VK+FP+DDPSKP  LTAFLGYKAGMTHIVREV++PGS                  NK E   A TI + P  V
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFICTGYNKIENANASTIPKIPDFV

Q4R5Q0 60S ribosomal protein L31.5e-1266.67Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFI
        VK+FP+DDPSKP  LTAFLGYKAGMTHIVREV++PG S ++ K  ++A  I
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFI

Arabidopsis top hitse value%identityAlignment
AT1G43170.1 ribosomal protein 16.2e-1483.78Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DD +KPC+ TAF+GYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

AT1G43170.2 ribosomal protein 16.2e-1483.78Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DD +KPC+ TAF+GYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

AT1G43170.3 ribosomal protein 16.2e-1483.78Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DD +KPC+ TAF+GYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

AT1G43170.5 ribosomal protein 16.2e-1483.78Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DD +KPC+ TAF+GYKAGMTHIVREVEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS

AT1G61580.1 R-protein L3 B3.3e-1589.19Show/hide
Query:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS
        VKAFP+DDP+KPCRLT+FLGYKAGMTHIVR+VEKPGS
Subjt:  VKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTTGATACCAAAATTCCTGTGAAGGCATTTCCTAGAGATGATCCATCAAAGCCTTGTAGGTTAACTGCTTTCCTTGGATACAAGGCTGGGATGACTCATATTGT
CAGAGAAGTTGAAAAGCCTGGATCGAGTTCCATCTCAAATAAACATCGGCTTCTAGCATTTTTCATATGTACTGGGTATAATAAAATAGAAAACGCCAACGCCTCAACAA
TTCCAAAAATCCCGGATTTTGTAAGGTTGAGGAGTGGTCCACCAACAAAGCTTCTAGCCTTCTATGATGTTGTCACTCAAAACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATTTGATACCAAAATTCCTGTGAAGGCATTTCCTAGAGATGATCCATCAAAGCCTTGTAGGTTAACTGCTTTCCTTGGATACAAGGCTGGGATGACTCATATTGT
CAGAGAAGTTGAAAAGCCTGGATCGAGTTCCATCTCAAATAAACATCGGCTTCTAGCATTTTTCATATGTACTGGGTATAATAAAATAGAAAACGCCAACGCCTCAACAA
TTCCAAAAATCCCGGATTTTGTAAGGTTGAGGAGTGGTCCACCAACAAAGCTTCTAGCCTTCTATGATGTTGTCACTCAAAACCAATAA
Protein sequenceShow/hide protein sequence
MQFDTKIPVKAFPRDDPSKPCRLTAFLGYKAGMTHIVREVEKPGSSSISNKHRLLAFFICTGYNKIENANASTIPKIPDFVRLRSGPPTKLLAFYDVVTQNQ