CuGenDBv2

Gene ID	Lag0039816
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribosome biogenesis protein BOP1 homolog
Genome location	chr13:188503..189673
RNA-Seq Expression	Lag0039816
Synteny	Lag0039816
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0031981 - nuclear lumen (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BBH05058.1 Transducin/WD40 repeat-like superfamily protein [Prunus dulcis]

3.1e-10

40.68

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQ-KLIKKLETGLHEVSSIAVHPAETDY------------HIARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVL
        +FHP    FFI    +   +RVYDL+K+ KL++KLE  L EVS IAVHP++ +             H +    GVMDCKFHPRQP +F    G+ D   +
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQ-KLIKKLETGLHEVSSIAVHPAETDY------------HIARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVL

Query:  SLRRSKETGLGTYYAAAW
          R+ KET     Y   W
Subjt:  SLRRSKETGLGTYYAAAW

OWM84882.1 hypothetical protein CDL15_Pgr027669 [Punica granatum]

7.9e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

PKI74872.1 hypothetical protein CRG98_004644 [Punica granatum]

7.9e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

XP_031393794.1 ribosome biogenesis protein BOP1 homolog [Punica granatum]

7.9e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

XP_042427411.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Zingiber officinale]

3.0e-05

67.35

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA
        +FHP    FFI    +  +VRVYDLLKQKL+KKLETGL EVSSIA+HPA
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA

TrEMBL top hits

e value

%identity

Alignment

A0A218XKP0 Ribosome biogenesis protein BOP1 homolog

3.8e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

A0A2I0L2D3 Uncharacterized protein

3.8e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

A0A4Y1RMA2 Transducin/WD40 repeat-like superfamily protein

1.5e-10

40.68

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQ-KLIKKLETGLHEVSSIAVHPAETDY------------HIARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVL
        +FHP    FFI    +   +RVYDL+K+ KL++KLE  L EVS IAVHP++ +             H +    GVMDCKFHPRQP +F    G+ D   +
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQ-KLIKKLETGLHEVSSIAVHPAETDY------------HIARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVL

Query:  SLRRSKETGLGTYYAAAW
          R+ KET     Y   W
Subjt:  SLRRSKETGLGTYYAAAW

A0A5B6ZIK1 Ribosome biogenesis protein BOP1 homolog

5.0e-06

35.94

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Query:  FHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAE------------------------------TDY------------------
        FHP    FF+    +   VRVYDLLKQKL+KKLETG+ EVSSIA+HP                                T Y                  
Subjt:  FHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAE------------------------------TDY------------------

Query:  ------HIARVSNGVMDCKFHPRQPLVF
              H +    GVMDCKFHPRQP +F
Subjt:  ------HIARVSNGVMDCKFHPRQPLVF

A0A6P8DH29 Ribosome biogenesis protein BOP1 homolog

3.8e-06

45.83

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS
        +FHP    FFI    +   VRVYDLLKQKLIKKLETGL EVSSIA+HPA  +  +     ++S   MD    P + L     C   D T ++  RS
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHI----ARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRS

SwissProt top hits

e value

%identity

Alignment

Q0D6V7 Ribosome biogenesis protein BOP1 homolog

4.5e-04

47.92

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHP
        +FHP    FF+    +  +V+VYDL K +L+KKLE+G+ E+SSI++HP
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHP

Q7T0W1 Ribosome biogenesis protein bop1-A

2.6e-04

59.18

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA
        LFHP    FF+    +  YVRVY+LLKQ+L KKL T    VSSIAVHPA
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA

Q7ZXX9 Ribosome biogenesis protein bop1-B

2.6e-04

59.18

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Query:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA
        LFHP    FF+    +  YVRVY+LLKQ+L KKL T    VSSIAVHPA
Subjt:  LFHP----FFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPA

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGCTTCCTGTTTCATCCCTTTTTCATCCCTCACGATCTATCTTCTTTGTATGTTCGTGTTTATGATCTATTGAAGCAAAAGCTCATAAAAAAGCTGGAAACTGGACT
ACATGAAGTTTCTTCTATTGCTGTGCATCCAGCTGAAACTGATTATCACATTGCTCGTGTCTCAAATGGAGTAATGGACTGTAAATTTCACCCTAGGCAGCCCTTGGTTT
TTTACTACTGGTGCGGATTCAGTGATCAAACTGTACTCTCATTGAGAAGGTCAAAGGAAACAGGCCTCGGCACGTATTATGCAGCAGCCTGGTGTGTGGGAATGTTGTTC
TGCTTGTATCAGATGAAGGTCAAAGAGTCCAATCTTGTCTGTTCTTCAAAGTTCAATCTAATCTTTTCACAATTAATCCATTAA

mRNA sequence

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Protein sequence

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MGFLFHPFFIPHDLSSLYVRVYDLLKQKLIKKLETGLHEVSSIAVHPAETDYHIARVSNGVMDCKFHPRQPLVFYYWCGFSDQTVLSLRRSKETGLGTYYAAAWCVGMLF
CLYQMKVKESNLVCSSKFNLIFSQLIH

Lag0039816 (gene) of Sponge gourd (AG-4) v1 genome