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Lag0039817 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039817
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosome biogenesis protein BOP1 homolog
Genome locationchr13:190752..191203
RNA-Seq ExpressionLag0039817
SyntenyLag0039817
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0007276 - gamete generation (biological process)
GO:0051302 - regulation of cell division (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601624.1 Ribosome biogenesis protein BOP1-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.6e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
KAG7032384.1 Ribosome biogenesis protein BOP1-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.2e-0775.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGS
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNSG+
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGS
XP_022957186.1 ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita moschata]2.6e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
XP_023546869.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita pepo subsp. pepo]2.6e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
XP_023546877.1 ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita pepo subsp. pepo]2.6e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
TrEMBL top hitse value%identityAlignment
A0A6J1D5R0 Ribosome biogenesis protein BOP1 homolog6.3e-0776.32Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+ KIKE LHVE LP TDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
A0A6J1GYI9 Ribosome biogenesis protein BOP1 homolog1.3e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
A0A6J1GZU4 Ribosome biogenesis protein BOP1 homolog1.3e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
A0A6J1K504 Ribosome biogenesis protein BOP1 homolog1.3e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
A0A6J1KDU0 Ribosome biogenesis protein BOP1 homolog1.3e-0773.68Show/hide
Query:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
        G DVLLLNTGFG+GEV+AK+KE LH++ LPATDNS  T
Subjt:  GADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCTTCAGGTTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGGGTGCTGATGTACTGCTTTTAAACACTGG
TTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTCTCCATGTTGAGACACTCCCTGCAACAGATAATTCTGGTAGTACGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCTTCAGGTTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGGGTGCTGATGTACTGCTTTTAAACACTGG
TTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTCTCCATGTTGAGACACTCCCTGCAACAGATAATTCTGGTAGTACGCAATAG
Protein sequenceShow/hide protein sequence
MDCFRFHWMEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEFLHVETLPATDNSGSTQ