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Lag0039818 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039818
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosome biogenesis protein BOP1 homolog
Genome locationchr13:191258..191770
RNA-Seq ExpressionLag0039818
SyntenyLag0039818
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0007276 - gamete generation (biological process)
GO:0051302 - regulation of cell division (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR012953 - BOP1, N-terminal domain
IPR028598 - WD repeat BOP1/Erb1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452624.1 hypothetical protein FNV43_RR03057 [Rhamnella rubrinervis]6.3e-2982.89Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRR+TSMR++PAY +A+KDSFERCLDLYLC RV++KRINID ESLKPKLPSR DLKPFP T YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

XP_011656053.1 ribosome biogenesis protein BOP1 homolog [Cucumis sativus]2.8e-2984.21Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP+R DL+P+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

XP_022149038.1 ribosome biogenesis protein BOP1 homolog [Momordica charantia]5.7e-3086.84Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLPSR DLKP+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

XP_038889804.1 ribosome biogenesis protein BOP1 homolog isoform X1 [Benincasa hispida]1.3e-2985.53Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP+R DLKP+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

XP_038889809.1 ribosome biogenesis protein BOP1 homolog isoform X2 [Benincasa hispida]1.3e-2985.53Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP+R DLKP+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

TrEMBL top hitse value%identityAlignment
A0A0A0KXT2 Ribosome biogenesis protein BOP1 homolog1.4e-2984.21Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP+R DL+P+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

A0A5A7TCN0 Ribosome biogenesis protein BOP1 homolog4.0e-2982.89Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLP+R DL+P+PTT YLE+
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

A0A6J1D5R0 Ribosome biogenesis protein BOP1 homolog2.7e-3086.84Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLPSR DLKP+PTT YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

A0A6J1K504 Ribosome biogenesis protein BOP1 homolog4.0e-2982.89Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MY+EDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLPSR DL+P+PTT YLE+
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

A0A6J1KDU0 Ribosome biogenesis protein BOP1 homolog4.0e-2982.89Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MY+EDRPKFIPRRFTSMRSVPAY +ALKD+FERCLDLYLC RV++KRINID ESLKPKLPSR DL+P+PTT YLE+
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

SwissProt top hitse value%identityAlignment
A8ID74 Ribosome biogenesis protein BOP1 homolog5.5e-2063.51Show/hide
Query:  EDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDS-ESLKPKLPSRNDLKPFPTTRYLEY
        EDRPK +P+ FTS+R+VPAY D +K+ FERCLDLYLC RV+RKR++I S E L P+LP   DL+PFPTT  L Y
Subjt:  EDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDS-ESLKPKLPSRNDLKPFPTTRYLEY

B3MHX6 Ribosome biogenesis protein BOP1 homolog7.5e-1758.82Show/hide
Query:  FIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        F+P++FTS+R+VPAY   L++ F RCLDLYLC R +R ++NID+E L PKLPS  DL+PFPT   L Y
Subjt:  FIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

F4IH25 Ribosome biogenesis protein BOP1 homolog7.7e-3077.63Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        M+EEDRPKFIP RFTS+RS+PAY +ALK+SFERCLDLYLC RV++KRINID ESLKPKLPSR DL+P+P + YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

Q0CCP0 Ribosome biogenesis protein erb15.7e-1757.97Show/hide
Query:  EEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTT
        E+   +F+P  F S+R VP Y + +K+ FERCLDLYL  RV+R ++NID ESL PKLPS  +LKPFPTT
Subjt:  EEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTT

Q0D6V7 Ribosome biogenesis protein BOP1 homolog3.6e-2771.05Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        MYEEDRPKFIPR+F  +RSVPAY  AL++ F+RCLDLYLC R ++KRINID ESLKPKLPS+ DL+P+P T YLE+
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY

Arabidopsis top hitse value%identityAlignment
AT2G40360.1 Transducin/WD40 repeat-like superfamily protein5.5e-3177.63Show/hide
Query:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY
        M+EEDRPKFIP RFTS+RS+PAY +ALK+SFERCLDLYLC RV++KRINID ESLKPKLPSR DL+P+P + YLEY
Subjt:  MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATTCATTTGAACGTTGCTTGGATCT
GTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATTCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCAAACCTTTTCCTACTACACGCTATC
TTGAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATTCATTTGAACGTTGCTTGGATCT
GTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATTCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCAAACCTTTTCCTACTACACGCTATC
TTGAATATTGA
Protein sequenceShow/hide protein sequence
MYEEDRPKFIPRRFTSMRSVPAYYDALKDSFERCLDLYLCARVQRKRINIDSESLKPKLPSRNDLKPFPTTRYLEY