CuGenDBv2

Gene ID	Lag0039901
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	chr13:738136..738666
RNA-Seq Expression	Lag0039901
Synteny	Lag0039901
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

1.0e-74

89.94

Show/hide

Query:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NK P+ +PSKPT+PISLP  +P K SLAGTAIAGAIFSTL SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKA+IVGLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

3.9e-74

88.2

Show/hide

Query:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+   P++PSKPT PISLP   PKSSLAG+AIAGAIFST    DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+I GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

3.5e-75

88.76

Show/hide

Query:  MAATMATMAILNAKCFTPNK--IPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+  +P++PSKPTRPISLP   PKSSLAG+AIAGAIFST    DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNK--IPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+I GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.7e-74

88.2

Show/hide

Query:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+   P++PSKPT P+SLP   PKSSLAG+AIAGAIFSTL   DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+I GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.2e-78

92.13

Show/hide

Query:  MAATMATMAILNAKCFTPNKIPIIPSKPTRPISLPTL--PPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNK P++PSKPTRPISLP+L  P K SLAGTAIAGAIFST  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKIPIIPSKPTRPISLPTL--PPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+IVGLGLGGL ASGLVGTPEAMAAEASSDGRGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

3.6e-73

88.83

Show/hide

Query:  MAATMATMAILNAKCFTP-NKIPIIPSKP-TRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NK P++PSKP T+PISLP  +  K SLAGTAIAGAIFSTL SGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKIPIIPSKP-TRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKA+IVGLGLGGL ASGLVGTPEAMAAEA SDGRGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

5.0e-75

89.94

Show/hide

Query:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NK P+ +PSKPT+PISLP  +P K SLAGTAIAGAIFSTL SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKA+IVGLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

5.0e-75

89.94

Show/hide

Query:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NK P+ +PSKPT+PISLP  +P K SLAGTAIAGAIFSTL SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKA+IVGLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

1.9e-74

88.2

Show/hide

Query:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+   P++PSKPT PISLP   PKSSLAG+AIAGAIFST    DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+I GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

1.7e-75

88.76

Show/hide

Query:  MAATMATMAILNAKCFTPNK--IPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+  +P++PSKPTRPISLP   PKSSLAG+AIAGAIFST    DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNK--IPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKA+I GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

2.8e-43

59.69

Show/hide

Query:  MAATMATMAILNAKCFTPNKIPIIPSKPTRP---ISLPTLP-PKSSLA--GTAIAGAIFSTLCSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N  P      T+    ISLPT P P  SLA   TA+AGA+FS+L   + A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKIPIIPSKPTRP---ISLPTLP-PKSSLA--GTAIAGAIFSTLCSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQLNRMRTEKAMIVGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQLNRMRTEKAMIVGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

1.0e-45

61.31

Show/hide

Query:  MAATMA-TMAILNAKCFT--PNKIPIIPSKPT-RPISLPTLPPKSS---------LAGTAIAGAIFSTLCSGDAAFAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NK      KPT +PISL  L   +S         +   AIAGA+F+TL S D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT--PNKIPIIPSKPT-RPISLPTLPPKSS---------LAGTAIAGAIFSTLCSGDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQLNRMRTE-KAMIVGLGLGGLAASG-LVGTPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQ+N+MR E KA IVGLGL GLA SG L+ TPEA AA       SD RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQLNRMRTE-KAMIVGLGLGGLAASG-LVGTPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

2.0e-44

59.69

Show/hide

Query:  MAATMATMAILNAKCFTPNKIPIIPSKPTRP---ISLPTLP-PKSSLA--GTAIAGAIFSTLCSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N  P      T+    ISLPT P P  SLA   TA+AGA+FS+L   + A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKIPIIPSKPTRP---ISLPTLP-PKSSLA--GTAIAGAIFSTLCSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQLNRMRTEKAMIVGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQLNRMRTEKAMIVGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAACAATGGCGACCATGGCCATCCTCAACGCCAAATGCTTCACTCCCAACAAAATTCCAATCATCCCTTCCAAACCCACGAGACCCATTTCCCTTCCCACCCT
CCCACCCAAATCTTCCCTCGCCGGAACCGCCATCGCCGGAGCAATCTTCTCAACTCTCTGCTCCGGCGATGCCGCCTTCGCCGCGCAGCAAATCGCGGATCTAGCGGAGG
GCGACAACCGGGGGCTGGCCCTGTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGCTGAACCGGATGCGGACGGAG
AAGGCGATGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCCGGGCTGGTCGGGACACCGGAGGCTATGGCGGCAGAGGCTTCGAGCGACGGGCGGGGACAGCTGCT
GCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTTTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCCGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATMATMAILNAKCFTPNKIPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTE
KAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Lag0039901 (gene) of Sponge gourd (AG-4) v1 genome