CuGenDBv2

Gene ID	Lag0039986
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase subunit 10-like protein
Genome location	chr13:1335332..1336063
RNA-Seq Expression	Lag0039986
Synteny	Lag0039986
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]

4.8e-30

92.65

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]

2.4e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]

1.4e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]

2.1e-30

94.12

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

XP_040374532.1 DNA-directed RNA polymerase subunit 10-like protein [Rosa chinensis]

3.1e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQ80 Uncharacterized protein

2.3e-30

92.65

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein

1.2e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

A0A2P6QFB0 Putative DNA-directed RNA polymerase transcription regulator Homeodomain-LIKE family

1.5e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein

1.2e-29

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein

6.7e-30

91.18

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYNT +++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

9.7e-26

80.65

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNY

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.5e-29

85.29

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5

4.4e-26

85.48

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGKVIGNKWD YL LLQ DY EG+ALD L L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

5.5e-29

85.29

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

1.5e-31

89.71

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MI+PVRCFTCGKVIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

3.9e-30

85.29

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

AT1G61700.1 RNA polymerases N / 8 kDa subunit

1.1e-32

89.71

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Query:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA
        MI+PVRCFTCGKVIGNKWDTYLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT E++
Subjt:  MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEA

Sequences

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CDS sequence

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ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTTGAACTTCTACAAGCAGACTATCCGGAAGGGGAGGCATTGGATAT
GTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAATTACAACACTGATGAGGAAGCCTTTCGATATGCCAACA
AGAAGAATGCTGCAATGCAATGCAATGCTGTGTAA

mRNA sequence

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Protein sequence

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MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEAFRYANKKNAAMQCNAV

Lag0039986 (gene) of Sponge gourd (AG-4) v1 genome