; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040024 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040024
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionAD domain-containing protein
Genome locationchr13:1629156..1631877
RNA-Seq ExpressionLag0040024
SyntenyLag0040024
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030198 - extracellular matrix organization (biological process)
GO:0030574 - collagen catabolic process (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR019181 - Anticodon-binding domain
IPR039683 - Protein Lsm12-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601368.1 Protein LSM12-like A, partial [Cucurbita argyrosperma subsp. sororia]2.0e-7395.39Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSE
        MALD SGNGDDF+VGSFFSIKTTLGDEFQ QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAE EAERIGVGVTSE
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSE

Query:  AQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        AQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Subjt:  AQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

KGN52415.2 hypothetical protein Csa_008581 [Cucumis sativus]4.1e-7490.8Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

TYK15583.1 protein LSM12-like protein A [Cucumis melo var. makuwa]2.0e-7389.57Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV++PYLP+SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

XP_004135229.1 protein LSM12 homolog A [Cucumis sativus]9.1e-7489.16Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQA
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

XP_038892233.1 protein LSM12 homolog A-like [Benincasa hispida]9.1e-7489.16Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQA
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

TrEMBL top hitse value%identityAlignment
A0A0A0KQA9 AD domain-containing protein4.4e-7489.16Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQA
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

A0A5A7SWT7 Protein LSM12-like protein A9.8e-7489.57Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV++PYLP+SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

A0A5D3CUL6 Protein LSM12-like protein A9.8e-7489.57Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV++PYLP+SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

A0A6J1DDK3 protein LSM12 homolog1.1e-7287.95Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA
        MALDGSGNGDDF VGSFFSIKTTLGDEFQG              QEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAREELAIRQA
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVS+PYL ESVTGGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

A0A6J1J8S1 protein LSM12 homolog A7.0e-7286.75Show/hide
Query:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA
        MALDG  NGDDFTVGSFFSIKTTLGDEFQG              QEGSK GPRRNIRLLKANYIKEFSFLGHGEDP+DLKKCYLD+NTLRAREELAIRQA
Subjt:  MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        E EAERIGVGVTSEAQSIFDALSKTLPVRWDK+VIVVMNEVRVSNPYLPESVTGGTPAAN+RVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

SwissProt top hitse value%identityAlignment
Q0VCF9 Protein LSM12 homolog4.9e-0627.61Show/hide
Query:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA
        G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ E   +    E P  L    +     +AR E   + ++A A
Subjt:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
          I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Subjt:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

Q3MHD2 Protein LSM12 homolog4.9e-0627.61Show/hide
Query:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA
        G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ E   +    E P  L    +     +AR E   + ++A A
Subjt:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
          I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Subjt:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

Q6NSN1 Protein LSM12 homolog B1.3e-0626.83Show/hide
Query:  GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYIKEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        G G+ F+VGS  S  T LG   QG+  +   P +                ++ L+   Y+ E   +    E P  L     +    RAR E   + + A 
Subjt:  GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYIKEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        A  +  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K+
Subjt:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

Q6PBA2 Protein LSM12 homolog A2.0e-0727.44Show/hide
Query:  GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAE
        G G+ F+VGS  S  T LG   QG+  +   P +                ++ L+   Y+ E   +    E P  L    +     RAR E   + ++A 
Subjt:  GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        A  I  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K+
Subjt:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

Q9D0R8 Protein LSM12 homolog4.9e-0627.61Show/hide
Query:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA
        G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ E   +    E P  L    +     +AR E   + ++A A
Subjt:  GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
          I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Subjt:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

Arabidopsis top hitse value%identityAlignment
AT1G24050.1 RNA-processing, Lsm domain7.5e-4255.56Show/hide
Query:  GNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA
        G G+ F VG+ +S+K   GDEF+G              +EG+KP P   +N R++ A++I   S+LG  EDPLD     +DLN LRA+E LAIRQAEA+A
Subjt:  GNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV
        ER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV +PYL + V GGT AAN RVKKV
Subjt:  ERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV

AT1G70220.1 RNA-processing, Lsm domain5.2e-1931.07Show/hide
Query:  LDGSGNGDDFTVGSFFSIKTTLGDEFQG------------------------------------------------------QEGSKPGP--RRNIRLLK
        +D  G  + F VG  +++K T GD+F G                                                      QEG+KP P   +++R++ 
Subjt:  LDGSGNGDDFTVGSFFSIKTTLGDEFQG------------------------------------------------------QEGSKPGP--RRNIRLLK

Query:  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAAN
         NYI E   LG  ++ L  K   ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + +PY  + V GG    N
Subjt:  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAAN

Query:  ERVKKV
        ERVK V
Subjt:  ERVKKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGAGGGTTCGAAGCCAGG
CCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACA
CTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAA
ACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGA
GCGGGTAAAGAAAGTGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGGGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTG
TTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGAGGGTTCGAAGCCAGG
CCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACA
CTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAA
ACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGA
GCGGGTAAAGAAAGTGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGGGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTG
TTTAA
Protein sequenceShow/hide protein sequence
MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK
TLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVAMACTEPFANWGEGIISFRGISVSAITKGFSV