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Lag0040061 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040061
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:1895266..1895643
RNA-Seq ExpressionLag0040061
SyntenyLag0040061
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4275975.1 unnamed protein product [Prunus armeniaca]1.7e-0733.33Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIV-GASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQL
        K+N D AW  +     +G +IRD  GN++ GAS F+V+   +   V+  AI +G++LAR++  + I+VE D    I  ++K   +   + P L  IW + 
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIV-GASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQL

Query:  VFFSDVNFVYISRMKEC
         FFS V + ++ R   C
Subjt:  VFFSDVNFVYISRMKEC

XP_018498111.1 PREDICTED: uncharacterized protein LOC108865556 [Pyrus x bretschneideri]6.5e-0730.51Show/hide
Query:  MGKVNEDAAWTSSPPSTGLGAIIRDFMGNIVGAS-VFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKT--EVWGEVEPWLEAI
        M KVN D +W  +P + G+G ++RD +G+++G + +  ++   K   V+V AI +G+ LA S G + ++VE DC   ++++ K+    +W ++ P +E I
Subjt:  MGKVNEDAAWTSSPPSTGLGAIIRDFMGNIVGAS-VFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKT--EVWGEVEPWLEAI

Query:  WYQLVFFSDVNFVYISRM
              FS +++ +I R+
Subjt:  WYQLVFFSDVNFVYISRM

XP_021800463.1 uncharacterized protein LOC110744764 [Prunus avium]5.9e-0834.19Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIV-GASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQL
        K+N D AW  +     +G +IRD  GN++ GAS F+V+   +   V+  AI +G+ LAR++  + I+VE D    I  ++KK  +   + P L  IW + 
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIV-GASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQL

Query:  VFFSDVNFVYISRMKEC
         FFS V + ++ R   C
Subjt:  VFFSDVNFVYISRMKEC

XP_024033533.1 uncharacterized protein LOC112095662 [Citrus clementina]3.2e-0639.33Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINL----VAKKTEVW
        K+N DAA  +     GLGA+IR+  G +V A+V S+ F     IV+  A+  G+ +A       +IVE DCS   NL    V+ KTE+W
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINL----VAKKTEVW

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.3e-1239.29Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQLV
        K+N DAAW  SP S+G  AIIRD  G++    + S+   Y  P+ +   + +G+ L   +  KKIIV+ DCS  I+L  K       V  WLE IW   +
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQLV

Query:  FFSDVNFVYISR
         F  +NF YI R
Subjt:  FFSDVNFVYISR

TrEMBL top hitse value%identityAlignment
A0A1R3JX53 RNase H domain-containing protein5.9e-0633.04Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQLV
        KVN DAA+  +   TGL A++RD  G ++   V    F        V AI  GV++AR+ G  + I+  DC   I  + + T+   E +  +E IW    
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQLV

Query:  FFSDVNFVYISR
        FF  + FV++ R
Subjt:  FFSDVNFVYISR

A0A5J5BB48 RNase H domain-containing protein3.8e-0527.06Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVW
        K+N D +W +      +G +IRD+ G+++G    ++ F   A +V+++A   G+S A+ +G   + +EYDC   ++ V   ++ +
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVW

A0A6J1DZK3 uncharacterized protein LOC1110249682.9e-0535.09Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASV-FSVKFDYKAPIV-KVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQ
        K+N DAA   S   +G+G ++R+    IVGA V F +    K P++ K++AI +G+SLA  LG  +++VE D  + +NL+  K+   GE   W+E I   
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASV-FSVKFDYKAPIV-KVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQ

Query:  LVFFSDVNFVYISR
           F ++ F ++ R
Subjt:  LVFFSDVNFVYISR

A0A6P5Y5S1 uncharacterized protein LOC1112892022.3e-0533.33Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEP
        KVN D A  S      +G ++RD  G + GA  F V     A +++ +A  K +  A  +GC+KI++E D     N + KK EV   + P
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEP

A0A6P5YMX5 uncharacterized protein LOC1112933932.3e-0533.33Show/hide
Query:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEP
        KVN D A  S      +G ++RD  G + GA  F V     A +++ +A  K +  A  +GC+KI++E D     N + KK EV   + P
Subjt:  KVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGGTTAACGAAGATGCAGCTTGGACTTCTTCTCCTCCGTCAACAGGGTTGGGGGCAATTATAAGAGATTTCATGGGCAACATAGTTGGAGCTTCGGTGTTTTC
AGTTAAATTCGACTATAAAGCCCCCATAGTAAAAGTGGTGGCAATTTTCAAAGGTGTATCGCTGGCTAGGTCGCTGGGATGTAAGAAAATTATTGTGGAATATGATTGCT
CTCAAACGATTAATCTGGTGGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAGCCTTGGTTGGAGGCCATTTGGTATCAACTTGTTTTTTTCTCCGATGTCAATTTTGTA
TACATTTCTAGAATGAAAGAATGCTTAATACGTGTGAAACTTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGGTTAACGAAGATGCAGCTTGGACTTCTTCTCCTCCGTCAACAGGGTTGGGGGCAATTATAAGAGATTTCATGGGCAACATAGTTGGAGCTTCGGTGTTTTC
AGTTAAATTCGACTATAAAGCCCCCATAGTAAAAGTGGTGGCAATTTTCAAAGGTGTATCGCTGGCTAGGTCGCTGGGATGTAAGAAAATTATTGTGGAATATGATTGCT
CTCAAACGATTAATCTGGTGGCAAAGAAAACTGAAGTTTGGGGTGAGGTGGAGCCTTGGTTGGAGGCCATTTGGTATCAACTTGTTTTTTTCTCCGATGTCAATTTTGTA
TACATTTCTAGAATGAAAGAATGCTTAATACGTGTGAAACTTGGGTAG
Protein sequenceShow/hide protein sequence
MGKVNEDAAWTSSPPSTGLGAIIRDFMGNIVGASVFSVKFDYKAPIVKVVAIFKGVSLARSLGCKKIIVEYDCSQTINLVAKKTEVWGEVEPWLEAIWYQLVFFSDVNFV
YISRMKECLIRVKLG