CuGenDBv2

Gene ID	Lag0040069
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RRM domain-containing protein
Genome location	chr13:1971186..1972078
RNA-Seq Expression	Lag0040069
Synteny	Lag0040069
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151094.1 uncharacterized protein At1g27050 [Momordica charantia]

5.0e-91

88.66

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPYPS HV TSV+KRRRP PPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DVPF+ REV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

3.3e-90

89.18

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Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

6.6e-91

89.69

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

1.5e-90

89.18

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLAST+VNPR+S+SSSRSD PF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

3.7e-94

92.27

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Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TSVAKRRRPPPP  S  ED+DMDKPL KPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRS+SSSRSDVPF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

2.5e-88

88.14

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TS AKRRRPPP    S  DDD++KP+ KPAPP ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDVPF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

2.5e-88

88.14

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H+ TS AKRRRPPP    S  DDD++KP+ KPAPP ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM 
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDVPF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

2.4e-91

88.66

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPYPS HV TSV+KRRRP PPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DVPF+ REV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

1.6e-90

89.18

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

3.2e-91

89.69

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD PF+GREV+AYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

1.3e-52

52.91

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFKGREVI
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +          SS  +    K R ++
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFKGREVI

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

9.0e-54

52.91

Show/hide

Query:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA
        MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFKGREVI
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +          SS  +    K R ++
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----------SSSRSDVPFKGREVI

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCTCCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCCTCCGCCGCCGGTACAGTCGTCGGCGGAAGACGATGATAT
GGACAAGCCCTTGCCGAAGCCTGCGCCACCGCCTGCTCTAGTCGTCGTTGACCTACCTTCACACTGTTCAGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCA
TCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCACTTATCGAACCAAAGACTCTGCTGATGCTGCCATGGCCGCCGCCCTCGATCCCTCATTCGGCTTCACC
ATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGACAAGGGATTAACGTTGGTGTCAACAAGAATAAGGAATTGTCATCGAAGCTCTT
GCGGGCAGAAGTGCCTCTGAGCAGACATGGGAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAGAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAAGG
GCAGGGAAGTTATTGCTTATGATGATATTCTCTAA

mRNA sequence

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Protein sequence

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MSRKRDKPYPSLHVHTSVAKRRRPPPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFKGREVIAYDDIL

Lag0040069 (gene) of Sponge gourd (AG-4) v1 genome