CuGenDBv2

Gene ID	Lag0040103
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Keratin, type II cytoskeletal 1-like
Genome location	chr13:2200966..2201388
RNA-Seq Expression	Lag0040103
Synteny	Lag0040103
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.8e-34

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        ++D+ FLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNPAYK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG     EY  KI +CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.6e-33

51.41

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTE--TIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++    +  PP++  T   S + S    PNP YK+WK+ ++L+S W++GSMS+ IL Q++HCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTE--TIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG  S  EY  KI++CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

4.5e-33

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNP YK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q MK K+KL NI+K      EY  KI+  VDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.8e-34

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        ++D+ FLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNPAYK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG     EY  KI +CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

4.5e-33

52.11

Show/hide

Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNP YK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q MK K+KL NI+K      EY  KI+  VDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.9e-35

52.11

Show/hide

Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        ++D+ FLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNPAYK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG     EY  KI +CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

7.5e-34

51.41

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTE--TIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++    +  PP++  T   S + S    PNP YK+WK+ ++L+S W++GSMS+ IL Q++HCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTE--TIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG  S  EY  KI++CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

2.2e-33

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNP YK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q MK K+KL NI+K      EY  KI+  VDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.9e-35

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        ++D+ FLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNPAYK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q M+ K+KL NI+KG     EY  KI +CVDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

2.2e-33

52.11

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS
        +SD+NFLLWKFQIL A E +DL++ +  +  PP++ +    S +AS    PNP YK+WK++D+L+SSW++GSMS+ IL Q+LHCK+AKEIW  L  IF+S
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETI--QVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNS

Query:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
        R+L Q MK K+KL NI+K      EY  KI+  VDAL++I K
Subjt:  RHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.1e-11

25.71

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNSRH
        ++  N+L+W  Q+   F+G++L   +      P  TI          + NP Y  WK++DKL+ S ++G++S S+   V    TA +IW  L +I+ +  
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNSRH

Query:  LTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK
           + +++++L+   KG  + ++Y+  +    D L+ + K
Subjt:  LTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAIRK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.8e-08

30.84

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Query:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIF---N
        ++  N+L+W  Q+   F+G++L   +      P  TI        V + NP Y  W+++DKL+ S I+G++S S+   V    TA +IW  L +I+   +
Subjt:  MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIF---N

Query:  SRHLTQI
          H+TQ+
Subjt:  SRHLTQI

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

5.4e-08

29.21

Show/hide

Query:  TVSKP---NPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNSRHLTQIMKIKSKLQNIQKGGSSTNEYISKIKK
        T+ KP   +P Y+ W++ + ++  W++ SM+  +LE V++ +TA ++W  L ++F      +I +++ +L  +++GG S  EY  K+ K
Subjt:  TVSKP---NPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNSRHLTQIMKIKSKLQNIQKGGSSTNEYISKIKK

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.1e-05

27.66

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Query:  SKPNP-AYKLWKKEDKLMSSWIVGSMSKSILEQVLHCK-TAKEIWSYLLQIFNSRHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAI
        S P P   K WK+ D L+  WI G+++ S+L+ ++    TA+++W  L  +F      + ++ +++L+       S +EY  K+K   D L+ +
Subjt:  SKPNP-AYKLWKKEDKLMSSWIVGSMSKSILEQVLHCK-TAKEIWSYLLQIFNSRHLTQIMKIKSKLQNIQKGGSSTNEYISKIKKCVDALSAI

Sequences

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CDS sequence

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ATGTCCGATGAAAATTTTCTTCTCTGGAAGTTCCAAATTCTTATCGCATTTGAAGGCCATGATCTAGACGATCATATCAGTGACGATTGCGTACCACCTACTGAGACGAT
TCAAGTAAGTGAGAATGCTTCGACGGTCAGTAAACCTAACCCTGCTTATAAACTATGGAAAAAGGAAGATAAGTTAATGTCATCTTGGATCGTTGGGTCTATGTCTAAAT
CCATTTTAGAGCAAGTTCTTCACTGTAAAACGGCAAAAGAAATTTGGTCCTATTTGCTTCAGATTTTTAATTCAAGGCATCTTACTCAAATTATGAAAATTAAGTCAAAA
CTTCAAAACATTCAGAAAGGAGGGTCTTCTACGAATGAATATATTTCTAAAATCAAGAAATGTGTAGATGCTTTGTCTGCAATAAGAAAATAG

mRNA sequence

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Protein sequence

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MSDENFLLWKFQILIAFEGHDLDDHISDDCVPPTETIQVSENASTVSKPNPAYKLWKKEDKLMSSWIVGSMSKSILEQVLHCKTAKEIWSYLLQIFNSRHLTQIMKIKSK
LQNIQKGGSSTNEYISKIKKCVDALSAIRK

Lag0040103 (gene) of Sponge gourd (AG-4) v1 genome