; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040212 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040212
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr13:2918512..2919792
RNA-Seq ExpressionLag0040212
SyntenyLag0040212
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152756.1 uncharacterized protein LOC111020399 [Momordica charantia]2.4e-1760Show/hide
Query:  VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS
        ++QY NPYFLHHSD+TSLVLVS PLT  NYT WS++M++ L +KNK+GFVD ++  P+ +L +SWII N+
Subjt:  VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]1.1e-1759.21Show/hide
Query:  PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS
        P NP VV+Q+ANPYFLHHSD+TSLVLVS  LT+ NYT WS+++++ L +KNKIGFVD ++  P++   +SWII N+
Subjt:  PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS

XP_038874906.1 uncharacterized protein LOC120067409 [Benincasa hispida]6.2e-1853.27Show/hide
Query:  MANDETDVPSILTFVLSPTFIPSNLQ-----PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQN
        M N    +P   T+  S    PS+ Q     P   S V QY+  YFLHHSDSTSLVLVS  LT+SNY+ WSQ+M L   +KNK+GF+D TLP P  +LQN
Subjt:  MANDETDVPSILTFVLSPTFIPSNLQ-----PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQN

Query:  SWIIYNS
        SWII NS
Subjt:  SWIIYNS

XP_038887186.1 uncharacterized protein LOC120077373 [Benincasa hispida]2.8e-1861.54Show/hide
Query:  NLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYN
        N++ +  S ++QY NPYFLH SDSTSLVLVS  LTESNY  WSQ M +GL +KNK+GF++  +P PS EL +SWIIYN
Subjt:  NLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYN

XP_038902375.1 uncharacterized protein LOC120089012 [Benincasa hispida]3.7e-1858.62Show/hide
Query:  TFVLSPTFIPSNLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWII
        TF LS  F PS     NP+V++QY N YFLHHSDST+LV+VS  LTE+NYT WSQ M++GL +KNK+GFVD ++P  + +L +SWII
Subjt:  TFVLSPTFIPSNLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWII

TrEMBL top hitse value%identityAlignment
A0A0A0LI19 Retrotran_gag_3 domain-containing protein5.0e-1353.09Show/hide
Query:  LSPTFIPSNLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNS
        L P    S  Q TN S ++QY+NPYFLHHS++TS+VLVS  LTE+NY  WSQ M + L  KNK+GF DD++  P   L  S
Subjt:  LSPTFIPSNLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNS

A0A6J1CMF8 uncharacterized protein LOC1110124688.2e-1658.33Show/hide
Query:  SVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS
        S+++ Y+NPY+LHHSD+TSLVLVS  L E+NYT WS++MI+ L +KNKIGFVD ++  PS    NSW I N+
Subjt:  SVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS

A0A6J1DIP8 uncharacterized protein LOC1110203991.1e-1760Show/hide
Query:  VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS
        ++QY NPYFLHHSD+TSLVLVS PLT  NYT WS++M++ L +KNK+GFVD ++  P+ +L +SWII N+
Subjt:  VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS

A0A6J1DKR8 uncharacterized protein LOC1110218312.0e-1447.73Show/hide
Query:  LSPTFIPSNLQPTNPSV--VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYN
        ++P    S+   ++ SV  VD   NPY+LHH+D+T LVLV+QPLTE NY+ WS++M++ L IKNK+GF+D ++  P  EL  +WI  N
Subjt:  LSPTFIPSNLQPTNPSV--VDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYN

A0A6J1DNP7 uncharacterized protein LOC1110220655.2e-1859.21Show/hide
Query:  PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS
        P NP VV+Q+ANPYFLHHSD+TSLVLVS  LT+ NYT WS+++++ L +KNKIGFVD ++  P++   +SWII N+
Subjt:  PTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESNYTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAAGGATCACTTGTGAATACGCCCAGTTCATTGTGTTTAGTCCATGCGAAGGCAATTGAAAGGCTGTTGCCCACTTCTGTCAGCCATTTGTACGTTGCTGC
ACGACAAAGTGGATCGGACAGTGTTAATTTCTTTCATATGGCTAATGACGAGACTGATGTTCCCTCTATTCTTACCTTTGTGCTTTCTCCTACCTTTATTCCTTCGAATC
TTCAGCCAACTAATCCCTCTGTTGTGGATCAGTATGCAAACCCTTATTTCCTCCACCATTCCGATAGTACTAGTCTGGTTCTTGTTTCTCAACCTCTCACCGAATCAAAC
TATACTCTGTGGAGTCAAACAATGATTCTTGGTTTGAAGATAAAGAATAAGATTGGATTTGTTGATGATACCCTTCCCTATCCTTCGAATGAATTGCAAAATTCGTGGAT
TATCTACAACAGTAGGAATAAGGTTTCATATGGCACCCTTCCCTGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAAGGATCACTTGTGAATACGCCCAGTTCATTGTGTTTAGTCCATGCGAAGGCAATTGAAAGGCTGTTGCCCACTTCTGTCAGCCATTTGTACGTTGCTGC
ACGACAAAGTGGATCGGACAGTGTTAATTTCTTTCATATGGCTAATGACGAGACTGATGTTCCCTCTATTCTTACCTTTGTGCTTTCTCCTACCTTTATTCCTTCGAATC
TTCAGCCAACTAATCCCTCTGTTGTGGATCAGTATGCAAACCCTTATTTCCTCCACCATTCCGATAGTACTAGTCTGGTTCTTGTTTCTCAACCTCTCACCGAATCAAAC
TATACTCTGTGGAGTCAAACAATGATTCTTGGTTTGAAGATAAAGAATAAGATTGGATTTGTTGATGATACCCTTCCCTATCCTTCGAATGAATTGCAAAATTCGTGGAT
TATCTACAACAGTAGGAATAAGGTTTCATATGGCACCCTTCCCTGTCCTTGA
Protein sequenceShow/hide protein sequence
MEGKGSLVNTPSSLCLVHAKAIERLLPTSVSHLYVAARQSGSDSVNFFHMANDETDVPSILTFVLSPTFIPSNLQPTNPSVVDQYANPYFLHHSDSTSLVLVSQPLTESN
YTLWSQTMILGLKIKNKIGFVDDTLPYPSNELQNSWIIYNSRNKVSYGTLPCP