CuGenDBv2

Gene ID	Lag0040262
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Mediator of RNA polymerase II transcription subunit 25
Genome location	chr13:3404078..3410842
RNA-Seq Expression	Lag0040262
Synteny	Lag0040262
Gene Ontology terms	NA
InterPro domains	IPR045105 - Med25/PTOV1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573988.1 Mediator of RNA polymerase II transcription subunit 25, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-50

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

KAG6601303.1 Mediator of RNA polymerase II transcription subunit 25, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-50

63.24

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Query:  NNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNRKHK
        NNA   MPLSQH+ GALQPA+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS S+K                                           
Subjt:  NNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNRKHK

Query:  LAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLYLEVR
           LAANWP TM IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+  VR
Subjt:  LAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLYLEVR

XP_022150501.1 mediator of RNA polymerase II transcription subunit 25 [Momordica charantia]

3.6e-51

64.13

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQTM IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

XP_022945397.1 mediator of RNA polymerase II transcription subunit 25-like isoform X3 [Cucurbita moschata]

1.8e-50

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

XP_023541647.1 mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Cucurbita pepo subsp. pepo]

1.8e-50

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBP2 Mediator of RNA polymerase II transcription subunit 25

1.8e-51

64.13

Show/hide

Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQTM IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

A0A6J1HT56 Mediator of RNA polymerase II transcription subunit 25

8.7e-51

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

A0A6J1HWR7 Mediator of RNA polymerase II transcription subunit 25

8.7e-51

63.59

Show/hide

Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

A0A6J1HXI9 Mediator of RNA polymerase II transcription subunit 25

8.7e-51

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

A0A6J1HZ64 Mediator of RNA polymerase II transcription subunit 25

8.7e-51

63.59

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Query:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR
        G  NNA   MPLSQHT GALQ A+SKYVK WEGNLSGQR+GQPV I+RMEGYR AS SDK                                        
Subjt:  GKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNR

Query:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
              LAANWPQ M IVRLISQDH+NN QYVGKADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

SwissProt top hits

e value

%identity

Alignment

A0A3Q7JC00 Mediator of RNA polymerase II transcription subunit 25

2.5e-47

59.34

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Query:  NNATTYMPLS-QHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNRKH
        N+ +  MPLS Q T+GAL  A+SKYVK+WEGNLSGQR+GQPV I+R+EGYR AS S+                                           
Subjt:  NNATTYMPLS-QHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNRKH

Query:  KLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
            LAANWP TM IVRLISQDH+NN QYVGKADFLVFRA+NQHGFL QLQEKKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  KLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

Q7XYY2 Mediator of RNA polymerase II transcription subunit 25

2.3e-48

55.28

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Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK
        T  V   A   + + G  N++   M LSQ ++GA+Q ++SKYVK+WEGNLSGQR+GQPVLI+R+EGYR AS SD                          
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK

Query:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
                             LAANWP TM IVRLISQDH+NN QYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

Arabidopsis top hits

e value

%identity

Alignment

AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1)

1.6e-49

55.28

Show/hide

Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK
        T  V   A   + + G  N++   M LSQ ++GA+Q ++SKYVK+WEGNLSGQR+GQPVLI+R+EGYR AS SD                          
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK

Query:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
                             LAANWP TM IVRLISQDH+NN QYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

AT1G25540.2 phytochrome and flowering time regulatory protein (PFT1)

1.6e-49

55.28

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Query:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK
        T  V   A   + + G  N++   M LSQ ++GA+Q ++SKYVK+WEGNLSGQR+GQPVLI+R+EGYR AS SD                          
Subjt:  TKSVNIGAFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLK

Query:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY
                             LAANWP TM IVRLISQDH+NN QYVGKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLSVSD+ACRLIGML+
Subjt:  LGHYAFYWLKFAFNRKHKLAQLAANWPQTMLIVRLISQDHINN-QYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCATACCAAGAGGGAGATCCCTCGCCGCTGCCGTGCCGGAGACTTTTCTCCGCGCGTAGAAGCTGTCCAGTCCATCAATTTCACAGCAAGGATGGAAAAACTAAA
ATCATCAGACAAAGAGGCAGTTAAAGTTGAAGTGGAGGAGTCAGGGCTCCAATGTGCTTTCAATTCCATCAATTTCATAGCAAGGATGGAAAAACTCAAATCATCAGGCA
AAGAGGCAGTTAAAGTTGAAATGGAGGAGTCAGGCCTCCAATCTGATCAGATACAGATGAATTGCAATCTAGTTGGAAAGGATGAATCAACAAAATCGGTGAACATAGGT
GCTTTCAAGAACGTGACGAGAAAGGGAAAGCGCAACAATGCAACAACTTACATGCCATTATCGCAGCATACAACAGGTGCTTTGCAACCAGCAAAATCCAAATACGTGAA
ACTTTGGGAGGGAAATCTATCTGGGCAGAGACGAGGCCAGCCTGTTTTGATTAGTAGAATGGAAGGTTACAGGAGGGCTTCAGATTCTGATAAGAGAACAGAGTGTAGGA
AATTGCAATTTTGTTGGACTGCAGTTAGGGCATTATGCTCTGTTAACTGTCATTTAAAGCTAGGGCATTATGCTTTCTACTGGCTGAAGTTTGCCTTCAACAGGAAACAT
AAACTGGCTCAGCTTGCAGCAAACTGGCCACAGACAATGCTAATAGTTCGGCTTATCTCACAAGATCATATTAACAATCAATATGTTGGAAAAGCTGATTTTCTTGTTTT
CCGAGCTTTGAATCAGCACGGGTTTCTTGGCCAGCTTCAAGAAAAGAAACTTTGTGCAGTCATTCAGTTGCCATCCCAGACTTTACTACTATCTGTTTCTGATAGAGCTT
GTCGCTTGATTGGGATGCTTTATCTTGAGGTCAGATATTTTTGA

mRNA sequence

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Protein sequence

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MIHTKREIPRRCRAGDFSPRVEAVQSINFTARMEKLKSSDKEAVKVEVEESGLQCAFNSINFIARMEKLKSSGKEAVKVEMEESGLQSDQIQMNCNLVGKDESTKSVNIG
AFKNVTRKGKRNNATTYMPLSQHTTGALQPAKSKYVKLWEGNLSGQRRGQPVLISRMEGYRRASDSDKRTECRKLQFCWTAVRALCSVNCHLKLGHYAFYWLKFAFNRKH
KLAQLAANWPQTMLIVRLISQDHINNQYVGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDRACRLIGMLYLEVRYF

Lag0040262 (gene) of Sponge gourd (AG-4) v1 genome