; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040263 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040263
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionMediator of RNA polymerase II transcription subunit 25
Genome locationchr13:3411963..3421334
RNA-Seq ExpressionLag0040263
SyntenyLag0040263
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain
IPR045105 - Med25/PTOV1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573988.1 Mediator of RNA polymerase II transcription subunit 25, partial [Cucurbita argyrosperma subsp. sororia]5.4e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

XP_022150501.1 mediator of RNA polymerase II transcription subunit 25 [Momordica charantia]1.4e-6079.61Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQTM IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

XP_022945396.1 mediator of RNA polymerase II transcription subunit 25-like isoform X2 [Cucurbita moschata]5.4e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

XP_022945397.1 mediator of RNA polymerase II transcription subunit 25-like isoform X3 [Cucurbita moschata]5.4e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

XP_023541647.1 mediator of RNA polymerase II transcription subunit 25-like isoform X1 [Cucurbita pepo subsp. pepo]5.4e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

TrEMBL top hitse value%identityAlignment
A0A6J1DBP2 Mediator of RNA polymerase II transcription subunit 256.8e-6179.61Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQTM IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A6J1HT56 Mediator of RNA polymerase II transcription subunit 252.6e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A6J1HWR7 Mediator of RNA polymerase II transcription subunit 252.6e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A6J1HXI9 Mediator of RNA polymerase II transcription subunit 252.6e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

A0A6J1HZ64 Mediator of RNA polymerase II transcription subunit 252.6e-6078.95Show/hide
Query:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK
        MP+  Q     +G  +NA  NMPLS+HTAGALQ  QSKYVK WEGNLSGQRQGQP FITRMEGYR ASASD+LAANWPQ M IVRLISQD +NNKQY GK
Subjt:  MPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNNKQYAGK

Query:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        ADFLVFRA+NQHGFLGQLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  ADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

SwissProt top hitse value%identityAlignment
A0A3Q7JC00 Mediator of RNA polymerase II transcription subunit 252.2e-5672.78Show/hide
Query:  LMPKP--KQENSPKMGK--CSNALTNMPLS-RHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN
        +MP P   Q+  P M     ++   NMPLS + T+GAL S QSKYVK+WEGNLSGQRQGQP FITR+EGYR ASAS+ LAANWP TM IVRLISQD +NN
Subjt:  LMPKP--KQENSPKMGK--CSNALTNMPLS-RHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN

Query:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        KQY GKADFLVFRA+NQHGFL QLQEKKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

Q7XYY2 Mediator of RNA polymerase II transcription subunit 251.7e-5669.62Show/hide
Query:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN
        +MP P      Q    ++G  +++  NM LS+ ++GA+Q++QSKYVK+WEGNLSGQRQGQP  ITR+EGYR ASASD LAANWP TM IVRLISQD +NN
Subjt:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN

Query:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        KQY GKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

Arabidopsis top hitse value%identityAlignment
AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1)1.2e-5769.62Show/hide
Query:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN
        +MP P      Q    ++G  +++  NM LS+ ++GA+Q++QSKYVK+WEGNLSGQRQGQP  ITR+EGYR ASASD LAANWP TM IVRLISQD +NN
Subjt:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN

Query:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        KQY GKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

AT1G25540.2 phytochrome and flowering time regulatory protein (PFT1)1.2e-5769.62Show/hide
Query:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN
        +MP P      Q    ++G  +++  NM LS+ ++GA+Q++QSKYVK+WEGNLSGQRQGQP  ITR+EGYR ASASD LAANWP TM IVRLISQD +NN
Subjt:  LMPKP-----KQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLIVRLISQDRVNN

Query:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG
        KQY GKADFLVFRA++QHGFLGQLQ+KKLCAVIQLPSQTLLLS+ +KA RLIG LFPG
Subjt:  KQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPG

AT3G25270.1 Ribonuclease H-like superfamily protein4.7e-0639.39Show/hide
Query:  IWKDNYPKKIKFFLWELAHKAISTKEILQRRMPFAALSLGWCSLCKAEDESQDHIFIHCPFAQHFW
        IWK     KIK FLW+L   A++T + L+RR      +   C  C  EDE+  H+F  C +AQ  W
Subjt:  IWKDNYPKKIKFFLWELAHKAISTKEILQRRMPFAALSLGWCSLCKAEDESQDHIFIHCPFAQHFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACAGAGGGAAAGGAGCTACAAGTTTAGACTTCAGATTCTCCCCAAAGAACATACACTTTTCTCATCTCCATACTTGATGCCGAAGCCGAAACAAGAAAACTCTCC
CAAAATGGGAAAGTGCAGCAATGCATTAACTAACATGCCATTATCACGGCATACAGCAGGCGCTTTGCAATCAACACAATCCAAATATGTGAAAATTTGGGAGGGAAATC
TATCTGGGCAGAGACAAGGCCAGCCTGCTTTTATTACCAGAATGGAAGGTTACAGGCATGCTTCAGCTTCTGATGAGCTTGCAGCAAACTGGCCACAGACAATGCTAATA
GTTCGGCTTATCTCACAAGATCGCGTTAATAACAAGCAATATGCTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTTTGAATCAGCACGGGTTTCTTGGCCAGCTTCAAGA
AAAGAAACTTTGTGCAGTCATCCAGTTGCCATCCCAGACTTTACTACTATCTATTTTTGAAAAAGCTTACCGCTTGATAGGGACGCTTTTTCCTGGGGTCAATACATTAC
CAGATGTTTGTTGTTGTTGTTTTCCTTATGCCTTAAGTAAATGGCGAGAATCCTTCATTTTGAGAATGGGGAGGAACTTGAAAGATGTTGAATCATACGAATGGGCAAGT
CTTACCTCGATTCTCGACCCCATTGTTCTCACTCAATCAGAGGATGTATGGAATTGGCCTCTCAATCCCAACGGACAGTTCTCTGTGAGATCTCTTTTAGCTAATATGGG
AGATAGACCATGGTTAATCGATCCCTTTCTTTCCAAGGCCATATGGAAGGACAATTACCCAAAGAAAATAAAATTCTTCTTATGGGAACTCGCTCACAAGGCCATTAGTA
CCAAAGAGATTCTCCAGAGACGCATGCCCTTTGCAGCTTTATCTCTAGGATGGTGTTCTCTCTGCAAAGCTGAAGATGAATCTCAAGATCACATTTTTATCCACTGTCCA
TTTGCTCAACATTTCTGGAACAAAATTTTCATCTCTTTTGGATGGTATTTGGCTTCTCCTGGGAATATCAAAGAATATCTTTGCACTATCTTTCTGGGGCATCCTTTCAA
GAACAAGAAGTCCATTCTTTGGCTGAATATATCTAGGGCTTTTTTTTGGATTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACAGAGGGAAAGGAGCTACAAGTTTAGACTTCAGATTCTCCCCAAAGAACATACACTTTTCTCATCTCCATACTTGATGCCGAAGCCGAAACAAGAAAACTCTCC
CAAAATGGGAAAGTGCAGCAATGCATTAACTAACATGCCATTATCACGGCATACAGCAGGCGCTTTGCAATCAACACAATCCAAATATGTGAAAATTTGGGAGGGAAATC
TATCTGGGCAGAGACAAGGCCAGCCTGCTTTTATTACCAGAATGGAAGGTTACAGGCATGCTTCAGCTTCTGATGAGCTTGCAGCAAACTGGCCACAGACAATGCTAATA
GTTCGGCTTATCTCACAAGATCGCGTTAATAACAAGCAATATGCTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTTTGAATCAGCACGGGTTTCTTGGCCAGCTTCAAGA
AAAGAAACTTTGTGCAGTCATCCAGTTGCCATCCCAGACTTTACTACTATCTATTTTTGAAAAAGCTTACCGCTTGATAGGGACGCTTTTTCCTGGGGTCAATACATTAC
CAGATGTTTGTTGTTGTTGTTTTCCTTATGCCTTAAGTAAATGGCGAGAATCCTTCATTTTGAGAATGGGGAGGAACTTGAAAGATGTTGAATCATACGAATGGGCAAGT
CTTACCTCGATTCTCGACCCCATTGTTCTCACTCAATCAGAGGATGTATGGAATTGGCCTCTCAATCCCAACGGACAGTTCTCTGTGAGATCTCTTTTAGCTAATATGGG
AGATAGACCATGGTTAATCGATCCCTTTCTTTCCAAGGCCATATGGAAGGACAATTACCCAAAGAAAATAAAATTCTTCTTATGGGAACTCGCTCACAAGGCCATTAGTA
CCAAAGAGATTCTCCAGAGACGCATGCCCTTTGCAGCTTTATCTCTAGGATGGTGTTCTCTCTGCAAAGCTGAAGATGAATCTCAAGATCACATTTTTATCCACTGTCCA
TTTGCTCAACATTTCTGGAACAAAATTTTCATCTCTTTTGGATGGTATTTGGCTTCTCCTGGGAATATCAAAGAATATCTTTGCACTATCTTTCTGGGGCATCCTTTCAA
GAACAAGAAGTCCATTCTTTGGCTGAATATATCTAGGGCTTTTTTTTGGATTCTTTGA
Protein sequenceShow/hide protein sequence
MGQRERSYKFRLQILPKEHTLFSSPYLMPKPKQENSPKMGKCSNALTNMPLSRHTAGALQSTQSKYVKIWEGNLSGQRQGQPAFITRMEGYRHASASDELAANWPQTMLI
VRLISQDRVNNKQYAGKADFLVFRALNQHGFLGQLQEKKLCAVIQLPSQTLLLSIFEKAYRLIGTLFPGVNTLPDVCCCCFPYALSKWRESFILRMGRNLKDVESYEWAS
LTSILDPIVLTQSEDVWNWPLNPNGQFSVRSLLANMGDRPWLIDPFLSKAIWKDNYPKKIKFFLWELAHKAISTKEILQRRMPFAALSLGWCSLCKAEDESQDHIFIHCP
FAQHFWNKIFISFGWYLASPGNIKEYLCTIFLGHPFKNKKSILWLNISRAFFWIL