; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040291 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040291
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionISWI chromatin-remodeling complex ATPase CHR11
Genome locationchr13:3630939..3633834
RNA-Seq ExpressionLag0040291
SyntenyLag0040291
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0031491 - nucleosome binding (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036306 - ISWI, HAND domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033470.1 ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis melo var. makuwa]1.8e-3459.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

KAG6593949.1 ISWI chromatin-remodeling complex ATPase CHR11, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3459.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

OMO98416.1 SNF2-related protein [Corchorus olitorius]4.0e-4296.84Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        +EKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDD+KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGP KPKEPRIPRMPQL
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

XP_008458481.1 PREDICTED: ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Cucumis melo]1.8e-3459.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

XP_022138478.1 ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Momordica charantia]1.8e-3459.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

TrEMBL top hitse value%identityAlignment
A0A0A0KFJ8 Uncharacterized protein8.7e-3559.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

A0A1R3JU97 SNF2-related protein1.9e-4296.84Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        +EKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDD+KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGP KPKEPRIPRMPQL
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

A0A5A7SRC8 ISWI chromatin-remodeling complex ATPase CHR11 isoform X18.7e-3559.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

A0A6J1CB76 ISWI chromatin-remodeling complex ATPase CHR11 isoform X18.7e-3559.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

A0A6J1KIC1 ISWI chromatin-remodeling complex ATPase CHR118.7e-3559.49Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

SwissProt top hitse value%identityAlignment
F4JY24 ISWI chromatin-remodeling complex ATPase CHR173.1e-2951.57Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        + KVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDE+K DFKKIVSENW +PPKRERKRNYSE EYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

O60264 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 58.7e-0829.81Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQ-------------------------------------------KTAEL-----------------------YD
        +E+++ERA  KL LD++VIQQGRL +Q                                           KTAE+                       Y+
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQ-------------------------------------------KTAEL-----------------------YD

Query:  FDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        F+ E    K   +KI    WIEPPKRERK NY+   YF++ +R   P  PK PR P+ P +
Subjt:  FDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

Q7G8Y3 Probable chromatin-remodeling complex ATPase chain8.7e-3251.9Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQK                                                               TAELYDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQK---------------------------------------------------------------TAELYDFDD

Query:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        +K+ENK DFKK+VS+NWIEPP+RERKRNYSESEYFKQ +RQG P KP+EPRIPRMP L
Subjt:  EKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

Q8RWY3 ISWI chromatin-remodeling complex ATPase CHR115.6e-3152.83Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDENK DFKKIVS+NW +PPKRERKRNYSESEYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

Q91ZW3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 58.7e-0829.81Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQ-------------------------------------------KTAEL-----------------------YD
        +E+++ERA  KL LD++VIQQGRL +Q                                           KTAE+                       Y+
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQ-------------------------------------------KTAEL-----------------------YD

Query:  FDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        F+ E    K   +KI    WIEPPKRERK NY+   YF++ +R   P  PK PR P+ P +
Subjt:  FDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

Arabidopsis top hitse value%identityAlignment
AT3G06400.1 chromatin-remodeling protein 114.0e-3252.83Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDENK DFKKIVS+NW +PPKRERKRNYSESEYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

AT3G06400.2 chromatin-remodeling protein 114.0e-3252.83Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        +EKVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDENK DFKKIVS+NW +PPKRERKRNYSESEYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

AT3G06400.3 chromatin-remodeling protein 116.8e-3252.17Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT-----------------------------------------------------------------AELYDF
        +EKVIERAYKKLALDALVIQQGRLAEQKT                                                                 A+ YDF
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT-----------------------------------------------------------------AELYDF

Query:  DDE-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        DD+ KDENK DFKKIVS+NW +PPKRERKRNYSESEYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  DDE-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

AT5G18620.1 chromatin remodeling factor172.2e-3051.57Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        + KVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDE+K DFKKIVSENW +PPKRERKRNYSE EYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL

AT5G18620.2 chromatin remodeling factor172.2e-3051.57Show/hide
Query:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD
        + KVIERAYKKLALDALVIQQGRLAEQKT                                                               A+ YDFDD
Subjt:  QEKVIERAYKKLALDALVIQQGRLAEQKT---------------------------------------------------------------AELYDFDD

Query:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL
        + KDE+K DFKKIVSENW +PPKRERKRNYSE EYFKQT+RQG P KPKEPRIPRMPQL
Subjt:  E-KDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTGACGTTTCCCCTCACCAGCGTGAATCGCTTCCTCTCATCCTCTCCCTGTCTTCCGCCGCCGCCTCTCAATCTTTCAGTCGCTCGTCGTTGAGGTCTGTCCT
GATGGAGAGTGGGAAACAGAAGGACGATGCAGATAATAAGAAAAAAGATGGAAAATCCAATATTTGCCAGGAATGTGGTGTTGATTTCAAAAAGCCTGCTTACTTGAAGC
AACATATGCAAAGCCATTCGCTCGAGCGTGAAGCATTGGATCCCACAATAAGAACTCCAACAATGCACGAGGCTGCATTTTTCTCACTCGATTGGATCAAGTCTCTAATA
TTTACTGTGTTGAGGCTGTGGAGTATGAGCGAAAGTTTACCCAATGGGAGACGATGCTCTCTAGAGCGGCCTCTACATGTCGAACCAAAACAGAATGATTTCGTTGCTCC
TTTAGCTGCAACCTCCATTGTCCCTGATGGGTTTTCATTCTCTGAATTCATATTACACGTTCTTGATGGTTTTACGAGGGCTTTTGAGAAGGAATATGGTTTTGGTGATA
AAATTGATGTCTTTATACATTCGTTGCAGGGGTTGTTGAGGAAGTGGAGGTTGTTGTGCAAGAGCCTCCACAGGGAAATTTTTCAGGAAAAAGTGATTGAAAGGGCTTAC
AAGAAACTTGCTCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTT
CAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAAGGTGGTCCAACAA
AACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTGACGTTTCCCCTCACCAGCGTGAATCGCTTCCTCTCATCCTCTCCCTGTCTTCCGCCGCCGCCTCTCAATCTTTCAGTCGCTCGTCGTTGAGGTCTGTCCT
GATGGAGAGTGGGAAACAGAAGGACGATGCAGATAATAAGAAAAAAGATGGAAAATCCAATATTTGCCAGGAATGTGGTGTTGATTTCAAAAAGCCTGCTTACTTGAAGC
AACATATGCAAAGCCATTCGCTCGAGCGTGAAGCATTGGATCCCACAATAAGAACTCCAACAATGCACGAGGCTGCATTTTTCTCACTCGATTGGATCAAGTCTCTAATA
TTTACTGTGTTGAGGCTGTGGAGTATGAGCGAAAGTTTACCCAATGGGAGACGATGCTCTCTAGAGCGGCCTCTACATGTCGAACCAAAACAGAATGATTTCGTTGCTCC
TTTAGCTGCAACCTCCATTGTCCCTGATGGGTTTTCATTCTCTGAATTCATATTACACGTTCTTGATGGTTTTACGAGGGCTTTTGAGAAGGAATATGGTTTTGGTGATA
AAATTGATGTCTTTATACATTCGTTGCAGGGGTTGTTGAGGAAGTGGAGGTTGTTGTGCAAGAGCCTCCACAGGGAAATTTTTCAGGAAAAAGTGATTGAAAGGGCTTAC
AAGAAACTTGCTCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTT
CAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAAGGTGGTCCAACAA
AACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGTAA
Protein sequenceShow/hide protein sequence
MATDVSPHQRESLPLILSLSSAAASQSFSRSSLRSVLMESGKQKDDADNKKKDGKSNICQECGVDFKKPAYLKQHMQSHSLEREALDPTIRTPTMHEAAFFSLDWIKSLI
FTVLRLWSMSESLPNGRRCSLERPLHVEPKQNDFVAPLAATSIVPDGFSFSEFILHVLDGFTRAFEKEYGFGDKIDVFIHSLQGLLRKWRLLCKSLHREIFQEKVIERAY
KKLALDALVIQQGRLAEQKTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQL