CuGenDBv2

Gene ID	Lag0040334
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Rad60-SLD domain-containing protein
Genome location	chr13:3942158..3945069
RNA-Seq Expression	Lag0040334
Synteny	Lag0040334
Gene Ontology terms	GO:0009451 - RNA modification (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003723 - RNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR022617 - Rad60/SUMO-like domain IPR029071 - Ubiquitin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7012997.1 Small ubiquitin-related modifier [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-96

84.51

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQP SVVC+DDEDSD + SR P SKR KISNS VT+ V     +N  VEIEDKEEDWLPPPPKV+VDAKDMCG+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESA+VDV NTPQ SLEPALDDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMY++KLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

XP_022945140.1 uncharacterized protein LOC111449468 [Cucurbita moschata]

8.1e-97

84.96

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQP SVVC+DDEDSD + SR P SKR KISNS VT+ V     +N  VEIEDKEEDWLPPPPKVSVDAKDMCG+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESA+VDV NTPQ SLEPALDDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMY++KLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

XP_022968592.1 uncharacterized protein LOC111467764 [Cucurbita maxima]

2.8e-97

85.84

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQPRSVVC+DDEDSD + SR P SKR KISNS VT+LV     DNQ VE EDKEEDWLPPPPKVSVDAKDM G+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESAKVDVG TP  SL+PA+DDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMYADKLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

XP_023541755.1 uncharacterized protein LOC111801815 [Cucurbita pepo subsp. pepo]

7.3e-98

85.84

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQPRSVVC+DDEDSD + SR P SKR KISNS VT+ V     +N VVEIEDKEEDWLPPPPKVSVDAKDMCG+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESAKVDVG TP  SLEPA+DDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMYADKLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPV LGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

XP_038891511.1 uncharacterized protein LOC120080907 [Benincasa hispida]

5.2e-96

85.84

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQPRSVVC+DDEDSDAD S  P SKR KI N   TSLVD NPK+ Q VEIEDKEEDWLPPPPKV VDA++MCG+DSTLKELRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESAKVDVGN P  SLEP LD QT IASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADK KIDPK+L+F+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPV LGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWH7 Rad60-SLD domain-containing protein

1.3e-92

83.19

Show/hide

Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQP SVVC+DDEDSDAD S  P +KRAKI N   TS V+GNPK+ Q VEIEDKEEDWLPPPPKV VDA++   +DSTLKELRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESAKVDVGNT    LEP LD QT +ASKERAKIVISVRDSDKEELKQ+RLFVDDKFERLFK+YADKLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTP GLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

A0A6J1G027 uncharacterized protein LOC111449468

3.9e-97

84.96

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQP SVVC+DDEDSD + SR P SKR KISNS VT+ V     +N  VEIEDKEEDWLPPPPKVSVDAKDMCG+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESA+VDV NTPQ SLEPALDDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMY++KLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

A0A6J1H158 uncharacterized protein LOC111458628

9.6e-96

84.96

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +AD AEEFEPLFDYSRVQPRSV C+DDEDSDA +S EP SKR++I N  VTSLVDG  KD Q VEIED+EEDWLPPPPKVSVDAK+MCG+DSTLKELRL 
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        K ELASVALSAKNLLREVEESAK+DVGNTPQ  LEPALDDQ  IASKERAKIVISVRDSDKEELKQFRLF+DDKFERLFKMYA+K KIDPKSLVFIFDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KVSP DTP GLGMEDDDMI+VNI+SS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

A0A6J1HTX5 uncharacterized protein LOC111467764

1.3e-97

85.84

Show/hide

Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +ADSAEEFEPLFDYSRVQPRSVVC+DDEDSD + SR P SKR KISNS VT+LV     DNQ VE EDKEEDWLPPPPKVSVDAKDM G+DSTLK+LRLK
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        KQELASVALSAKNLLREVEESAKVDVG TP  SL+PA+DDQ  IASKER KIVISVRDSDKEEL+QFRLFVDDKFERLFKMYADKLKIDPKSLVF+FDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMIEVNIKSS
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

A0A6J1JEF8 uncharacterized protein LOC111483658

1.8e-94

82.74

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Query:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK
        +AD AEEFEPLF+YSRV PRSV C+D+EDSDA +S EP SKR++I N  VTSLVDGNPK+ Q VEIED+EEDWLPPPPKVSVDAK+MCG+DSTLKELRL 
Subjt:  VADSAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLK

Query:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD
        K ELASV LSAKNLLREVEESAK+DVGNTPQ  LEPALDDQ  IASKERAKIVISVRDSDKEELKQFR+F+DDKFERLFKMYA+K KIDPKSLVFIFDGD
Subjt:  KQELASVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGD

Query:  KVSPGDTPVGLGMEDDDMIEVNIKSS
        KV P DTPVGLGMEDDDMI+VNI+ S
Subjt:  KVSPGDTPVGLGMEDDDMIEVNIKSS

SwissProt top hits

e value

%identity

Alignment

P55853 Small ubiquitin-related modifier

9.9e-05

40.96

Show/hide

Query:  DDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPGDTPVGLGMEDDDMIEV
        DD  Q A      I I V   D  E+  FR+       +L K YAD+  +   SL F+FDG +++  DTP  L MEDDD+IEV
Subjt:  DDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPGDTPVGLGMEDDDMIEV

Arabidopsis top hits

e value

%identity

Alignment

AT1G68185.1 Ubiquitin-like superfamily protein

4.5e-45

47.96

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Query:  EEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLKKQELA
        E+ EPLFDY RVQP + VCIDD+D DA V+  P+ K+AK S +     V+    D +V+E+   ++DWL PPPKV  D      +DST+K LR KK EL 
Subjt:  EEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLKKQELA

Query:  SVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPG
        S   +  ++++EVEESAK +V  +   S E A    ++  + +RAKIVI+++D D +  K  R+F D+KFER+ K+Y DK K+DP++LVFIFDGDK+ P 
Subjt:  SVALSAKNLLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPG

Query:  DTPVGLGMEDDDMIEVNIKSS
         TP  LGMED DMIEV+ K +
Subjt:  DTPVGLGMEDDDMIEVNIKSS

AT5G55856.1 Ubiquitin-like superfamily protein

1.0e-04

33.33

Show/hide

Query:  IVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPGDTPVGLGMEDDDMIE
        I + V++ D +    FR+  D +  ++   Y+DK+ ++  +L F+FDG+++    TP  LG+ED+D IE
Subjt:  IVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPGDTPVGLGMEDDDMIE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTAAGCAGAACGATGGGAAACAGGAAAGTAAGAGCAAGAGGAGGGTCCGAGAATAGAGTTCGGGCCCCCCTCTTCAGTGGCGGGTATAAATATATGCTCATGCTCCT
AGGGTTTTTAGGAGTTCAGAGGCGTTTCGGGACAAACCAGGCGGAATCGGGGCGGCCAGAGGCGGTAGGGACCAAACGGAGCATGACGAGCTTGGCCAGGGGGTCGGGCT
CCTTCGGTCTTAGCCCGTCCCACTTGCCGGTTTCGTCTCTGGGGTCCATCTCCCAACCTTATTTCTGCTCGGTTGTTCTCGTCAACTCCTTGTACATCGGAGTGGCGGAT
TCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCGCTCCGTTGTTTGTATCGACGACGAGGATTCGGACGCAGACGTGTCTCGGGAACCTCTTTC
TAAGCGGGCGAAGATTTCAAATTCGAGGGTTACGAGTTTGGTGGATGGTAACCCAAAAGACAATCAAGTTGTGGAAATTGAAGATAAAGAGGAAGATTGGCTACCTCCTC
CACCGAAGGTGTCTGTTGATGCAAAAGATATGTGTGGGCAAGATTCCACGTTGAAGGAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCAGTTGCACTGTCGGCTAAAAAC
TTGTTGCGAGAAGTGGAGGAATCTGCAAAAGTGGATGTTGGAAACACGCCCCAGGCCTCCCTGGAGCCTGCTTTGGATGACCAAACTCAAATTGCTTCTAAAGAAAGAGC
AAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAGGAGCTCAAACAGTTTCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAAAATGTATGCGGACAAACTTA
AAATCGACCCTAAGAGTTTGGTTTTCATTTTCGATGGTGATAAAGTCAGCCCAGGCGACACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTGAACATC
AAGTCGAGTTGA

mRNA sequence

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Protein sequence

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MLSRTMGNRKVRARGGSENRVRAPLFSGGYKYMLMLLGFLGVQRRFGTNQAESGRPEAVGTKRSMTSLARGSGSFGLSPSHLPVSSLGSISQPYFCSVVLVNSLYIGVAD
SAEEFEPLFDYSRVQPRSVVCIDDEDSDADVSREPLSKRAKISNSRVTSLVDGNPKDNQVVEIEDKEEDWLPPPPKVSVDAKDMCGQDSTLKELRLKKQELASVALSAKN
LLREVEESAKVDVGNTPQASLEPALDDQTQIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKLKIDPKSLVFIFDGDKVSPGDTPVGLGMEDDDMIEVNI
KSS

Lag0040334 (gene) of Sponge gourd (AG-4) v1 genome