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Lag0040388 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040388
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationchr13:4388656..4392702
RNA-Seq ExpressionLag0040388
SyntenyLag0040388
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4976565.1 hypothetical protein JHK86_036039 [Glycine max]1.8e-1375.93Show/hide
Query:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
KAG5070513.1 hypothetical protein JHK85_002890 [Glycine max]1.8e-1375.93Show/hide
Query:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
KAG5103940.1 hypothetical protein JHK82_040910 [Glycine max]1.8e-1375.93Show/hide
Query:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
MBA0743511.1 hypothetical protein [Gossypium gossypioides]1.8e-1375.47Show/hide
Query:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY WTTDS++VP
Subjt:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
PPR83386.1 hypothetical protein GOBAR_AA37328 [Gossypium barbadense]1.4e-1375.47Show/hide
Query:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
TrEMBL top hitse value%identityAlignment
A0A078G6E9 BnaC09g29100D protein1.1e-1381.63Show/hide
Query:  VDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  VDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
A0A2P5VX21 Uncharacterized protein ycf686.7e-1475.47Show/hide
Query:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
A0A498JU90 Uncharacterized protein1.1e-1381.63Show/hide
Query:  VDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  VDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
A0A5D2YN44 Uncharacterized protein (Fragment)1.1e-1375.47Show/hide
Query:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Subjt:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
A0A7J9C4V3 Uncharacterized protein8.7e-1475.47Show/hide
Query:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
        K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY WTTDS++VP
Subjt:  KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein7.3e-0534.02Show/hide
Query:  MKAQHHSISGCHSPLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMASEG
        MK  H S     +PL AE  A+L  LQ        ++ +  DC  LI  ING +   SS++  L DI      F  + F F+ R+ N+ AH +A  G
Subjt:  MKAQHHSISGCHSPLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMASEG
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0434.57Show/hide
Query:  PLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMA
        PL AEA+A+   LQ A+ + + +L++ SD   LI +I  +    +     ++DI  L   F  V+F FV R  NR A  +A
Subjt:  PLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCT
AACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATT
TTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCA
ACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCAT
CACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAG
TACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCT
AACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATT
TTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCA
ACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCAT
CACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAG
TACCATGA
Protein sequenceShow/hide protein sequence
MKAQHHSISGCHSPLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMASEGYSAPPCLWLGGHP
TQNFSKRSLLNFKVPMIEPPKRKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP