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Lag0040396 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040396
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:4436014..4436787
RNA-Seq ExpressionLag0040396
SyntenyLag0040396
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.6e-1055.36Show/hide
Query:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA
        +++ DGKD WCP+ YE+LPDFC+ CG +GHS RECE      T    +QYG+WLRA
Subjt:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.3e-0950.75Show/hide
Query:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQD
        +Q  DGKD WCP+ YE+LPDFC+ CG +GHS RE E      T  G  QYG WLRA       + QD
Subjt:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQD

XP_030936140.1 uncharacterized protein LOC115961275 [Quercus lobata]3.2e-0844.19Show/hide
Query:  DDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGED--QYGEWLRAGAFLGESIRQDPGQVGVKSSGKQSAVEPTPV
        +DGKD W P  YERLP+ C+ CGCL H  R CE   AS    GE+  Q+G WL+A  FL  S  +     G K   K++   P PV
Subjt:  DDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGED--QYGEWLRAGAFLGESIRQDPGQVGVKSSGKQSAVEPTPV

XP_035551148.1 uncharacterized protein LOC118349711 [Juglans regia]9.2e-0829.37Show/hide
Query:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE
        G+  W P+ YE+LP FCF CGCL H +  CE     +   G +QYG WLRA    GE I+++   V +  +  GK   ++   V G+ V  ++       
Subjt:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE

Query:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA
         G  +   G E  +  +++  EI   E  K  ++ G     + + +   E       GE +   V  + EL+   + +KG  + +       KG WKRRA
Subjt:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA

Query:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ
        RE   +V N    +     K++   G    +GG   R++E    ESG   +   S S  VAV QP  SQ
Subjt:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ

XP_042974300.1 uncharacterized protein LOC122305841 [Carya illinoinensis]7.1e-0832.32Show/hide
Query:  DGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA-----GAFLGESIRQDPGQVGVKSSGKQSAVEPTPVSGEVVGPVQ---
        +G+  W P+ YE LP  CF CG L H    C+        +G  Q+G WLRA     G+F G  +++D G    + +G    V     + E  GP Q   
Subjt:  DGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA-----GAFLGESIRQDPGQVGVKSSGKQSAVEPTPVSGEVVGPVQ---

Query:  GDVHEKEAGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAMVVDKVELVQGGDVEKGGKSTSSKGWKRRAREI
        G   +K + V    V E   +  + T  E  T + G      GSG G   V        S   EGE   V    LV   D +KG +      WKRRARE 
Subjt:  GDVHEKEAGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAMVVDKVELVQGGDVEKGGKSTSSKGWKRRAREI

Query:  LADVTNSEVSVTLDGSKR---KVGPGSLAGQGGKKMRVEEESGILPDMTDSTSAVAVSQPRQS
           ++NS     L G KR   +VG G ++G+ G+K R E+ +G   ++ +   A AV QPR S
Subjt:  LADVTNSEVSVTLDGSKR---KVGPGSLAGQGGKKMRVEEESGILPDMTDSTSAVAVSQPRQS

TrEMBL top hitse value%identityAlignment
A0A6J1D765 uncharacterized protein LOC1110179021.3e-1055.36Show/hide
Query:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA
        +++ DGKD WCP+ YE+LPDFC+ CG +GHS RECE      T    +QYG+WLRA
Subjt:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRA

A0A6J1DAR4 uncharacterized protein LOC1110189546.2e-1050.75Show/hide
Query:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQD
        +Q  DGKD WCP+ YE+LPDFC+ CG +GHS RE E      T  G  QYG WLRA       + QD
Subjt:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQD

A0A6J1DVS4 uncharacterized protein LOC1110235551.7e-0769.44Show/hide
Query:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECE
        ++  DGKD WCP+ YERLPDFC+GCGC+GHS RE E
Subjt:  MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECE

A0A6P9EQS3 uncharacterized protein LOC1183497094.5e-0829.37Show/hide
Query:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE
        G+  W P+ YE+LP FCF CGCL H +  CE     +   G +QYG WLRA    GE I+++   V +  +  GK   ++   V G+ V  ++       
Subjt:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE

Query:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA
         G  +   G E  +  +++  EI   E  K  ++ G     + + +   E       GE +   V  + EL+   + +KG  + +       KG WKRRA
Subjt:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA

Query:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ
        RE   +V N    +     K++   G    +GG   R++E    ESG   +   S S  VAV QP  SQ
Subjt:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ

A0A6P9F5H1 uncharacterized protein LOC1183497114.5e-0829.37Show/hide
Query:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE
        G+  W P+ YE+LP FCF CGCL H +  CE     +   G +QYG WLRA    GE I+++   V +  +  GK   ++   V G+ V  ++       
Subjt:  GKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSS--GKQSAVEPTPVSGEVVGPVQGDVHEKE

Query:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA
         G  +   G E  +  +++  EI   E  K  ++ G     + + +   E       GE +   V  + EL+   + +KG  + +       KG WKRRA
Subjt:  AGVPDSVVGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAM---VVDKVELVQGGDVEKGGKSTS------SKG-WKRRA

Query:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ
        RE   +V N    +     K++   G    +GG   R++E    ESG   +   S S  VAV QP  SQ
Subjt:  REILADVTNSEVSVTLDGSKRKVGPGSLAGQGGKKMRVEE----ESGILPDMTDSTS-AVAVSQPRQSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGATGATGATGGGAAGGACTCTTGGTGCCCAGTTTTGTACGAGCGTCTCCCAGACTTCTGCTTTGGGTGTGGATGTTTAGGCCATTCAAGGCGGGAGTGCGAGGG
TGTGGGGGCAAGTTCTACGGGTGCGGGGGAGGATCAGTATGGTGAGTGGCTGAGAGCAGGTGCTTTTCTTGGAGAGAGTATTCGGCAGGATCCAGGTCAGGTAGGTGTAA
AGAGCAGTGGGAAGCAGTCCGCAGTGGAACCCACGCCTGTTTCAGGGGAGGTAGTAGGTCCCGTTCAGGGTGATGTGCATGAGAAGGAGGCAGGGGTACCTGACAGCGTT
GTTGGGGAGGAAGTGCCAGTTCCTGCGCTGGATACACGGGCAGAGATTTGCACGGTGGAGGGAGGGAAGACAGCCCAGATGGAGGGTAGTGGGAAGGGAAAGCAGAAGGT
GGGGCACGACCCCCCTGAACCGTGGTCCACCTATGTGGAGGGGGAGGCTATGGTGGTGGACAAGGTGGAGTTGGTCCAGGGCGGAGATGTTGAGAAGGGGGGCAAGAGTA
CCAGTAGCAAAGGGTGGAAGAGGCGAGCAAGAGAGATTTTAGCAGATGTTACAAATTCTGAGGTTTCTGTGACGTTGGATGGGAGCAAACGGAAGGTTGGTCCGGGGTCG
TTGGCCGGACAGGGGGGAAAGAAGATGAGAGTGGAGGAGGAAAGTGGGATTCTACCAGATATGACTGACTCGACTTCGGCGGTGGCTGTCTCACAGCCCCGCCAGTCGCA
ATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGATGATGATGGGAAGGACTCTTGGTGCCCAGTTTTGTACGAGCGTCTCCCAGACTTCTGCTTTGGGTGTGGATGTTTAGGCCATTCAAGGCGGGAGTGCGAGGG
TGTGGGGGCAAGTTCTACGGGTGCGGGGGAGGATCAGTATGGTGAGTGGCTGAGAGCAGGTGCTTTTCTTGGAGAGAGTATTCGGCAGGATCCAGGTCAGGTAGGTGTAA
AGAGCAGTGGGAAGCAGTCCGCAGTGGAACCCACGCCTGTTTCAGGGGAGGTAGTAGGTCCCGTTCAGGGTGATGTGCATGAGAAGGAGGCAGGGGTACCTGACAGCGTT
GTTGGGGAGGAAGTGCCAGTTCCTGCGCTGGATACACGGGCAGAGATTTGCACGGTGGAGGGAGGGAAGACAGCCCAGATGGAGGGTAGTGGGAAGGGAAAGCAGAAGGT
GGGGCACGACCCCCCTGAACCGTGGTCCACCTATGTGGAGGGGGAGGCTATGGTGGTGGACAAGGTGGAGTTGGTCCAGGGCGGAGATGTTGAGAAGGGGGGCAAGAGTA
CCAGTAGCAAAGGGTGGAAGAGGCGAGCAAGAGAGATTTTAGCAGATGTTACAAATTCTGAGGTTTCTGTGACGTTGGATGGGAGCAAACGGAAGGTTGGTCCGGGGTCG
TTGGCCGGACAGGGGGGAAAGAAGATGAGAGTGGAGGAGGAAAGTGGGATTCTACCAGATATGACTGACTCGACTTCGGCGGTGGCTGTCTCACAGCCCCGCCAGTCGCA
ATGA
Protein sequenceShow/hide protein sequence
MQDDDGKDSWCPVLYERLPDFCFGCGCLGHSRRECEGVGASSTGAGEDQYGEWLRAGAFLGESIRQDPGQVGVKSSGKQSAVEPTPVSGEVVGPVQGDVHEKEAGVPDSV
VGEEVPVPALDTRAEICTVEGGKTAQMEGSGKGKQKVGHDPPEPWSTYVEGEAMVVDKVELVQGGDVEKGGKSTSSKGWKRRAREILADVTNSEVSVTLDGSKRKVGPGS
LAGQGGKKMRVEEESGILPDMTDSTSAVAVSQPRQSQ