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Lag0040401 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040401
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationchr13:4488958..4491057
RNA-Seq ExpressionLag0040401
SyntenyLag0040401
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4275.94Show/hide
Query:  IFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHR
        +F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGSAQAHHR
Subjt:  IFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHR

Query:  QGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        QGR  NAGN YE NMGLL A+VLAAIAHL+ VF
Subjt:  QGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.5e-4474.82Show/hide
Query:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        AQAHHRQGR  NAGN YE NMGLL A+VLAAI HL+ VF
Subjt:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

XP_022987717.1 uncharacterized protein LOC111485159 [Cucurbita maxima]3.3e-4474.1Show/hide
Query:  RREMGLIFVLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSA  Q+ILPTE NYHQKT  EKH +DGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFVLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        AQAHHRQGRP NAGN YE NMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]8.7e-4575.54Show/hide
Query:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        AQAHHRQGR  NAGN YE NMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

XP_038892711.1 uncharacterized protein LOC120081693 [Benincasa hispida]2.3e-4576.43Show/hide
Query:  RREMGLIFVLFCSTMAISSAL--QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGS--AAGGENGGGSRPHTGGGGTAVIPIYAAG
        RR + LI +L CSTMAISSA   Q+I PTESNY QKT TEK  KDG+TNQ+ RRYS + ITVSNGIG GS  A GGENGGGSRPH  GGGTAVIP+YAAG
Subjt:  RREMGLIFVLFCSTMAISSAL--QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGS--AAGGENGGGSRPHTGGGGTAVIPIYAAG

Query:  SAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        SAQAHHRQGRPHNAGNR+E N GLL AAVLAAIAHLY VF
Subjt:  SAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein1.3e-3867.76Show/hide
Query:  RREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSN------------GIGHGSAAGGENGGGSRPHTGG
        RR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T+KH K GVTNQ+ RRYS S ITVSN            G G  +AAGG   GGSRP T G
Subjt:  RREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSN------------GIGHGSAAGGENGGGSRPHTGG

Query:  GGTAVIPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        GGTAVIP+YAAGSAQAHHRQGR HNAGN YE NMGLL AAVLAAIAHL  VF
Subjt:  GGTAVIPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

A0A1S3BFU8 uncharacterized protein LOC1034893828.2e-4171.43Show/hide
Query:  MERREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV
        MERR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T K  K GVTNQ+ RRYS S ITVSN I     G  +A GGENGGGSRPHT GGGTAV
Subjt:  MERREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV

Query:  IPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        IP+YAAGSAQA HRQGRPHNAGN YE N GLL AAVLAAIAHL  V+
Subjt:  IPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

A0A5A7SUI0 Uncharacterized protein8.2e-4171.43Show/hide
Query:  MERREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV
        MERR + LIF+LFCST+AISSA   Q+I P  TESNY QKT T K  K GVTNQ+ RRYS S ITVSN I     G  +A GGENGGGSRPHT GGGTAV
Subjt:  MERREMGLIFVLFCSTMAISSAL--QEILP--TESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGI-----GHGSAAGGENGGGSRPHTGGGGTAV

Query:  IPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        IP+YAAGSAQA HRQGRPHNAGN YE N GLL AAVLAAIAHL  V+
Subjt:  IPIYAAGSAQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like1.2e-4474.82Show/hide
Query:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSAL Q+ILPTESNYHQKT  EKH KDGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFVLFCSTM-AISSAL-QEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        AQAHHRQGR  NAGN YE NMGLL A+VLAAI HL+ VF
Subjt:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

A0A6J1JB47 uncharacterized protein LOC1114851591.6e-4474.1Show/hide
Query:  RREMGLIFVLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS
        RRE+ L+F+LFCST+ AISSA  Q+ILPTE NYHQKT  EKH +DGVTN++   YS   ITVS GIGHGSAA GGENGGG RP  GGGG AVIP+YAAGS
Subjt:  RREMGLIFVLFCSTM-AISSA-LQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAA-GGENGGGSRPHTGGGGTAVIPIYAAGS

Query:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF
        AQAHHRQGRP NAGN YE NMGLL A+VLAAIAHL+ VF
Subjt:  AQAHHRQGRPHNAGNRYEKNMGLLAAAVLAAIAHLYTVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGAAGAGAGATGGGATTGATTTTCGTGCTGTTTTGTTCTACCATGGCTATTTCATCTGCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTACCACCAGAAAAC
TAAGACAGAAAAACATGACAAAGATGGGGTTACTAACCAGGTTGGCAGAAGATACAGTGTAAGTACGATCACCGTTTCTAATGGGATCGGTCATGGAAGCGCAGCCGGCG
GAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGAGGTACCGCCGTAATCCCAATTTATGCAGCCGGTTCGGCACAAGCACATCACCGCCAGGGTCGACCCCAC
AATGCAGGAAATCGCTATGAGAAGAACATGGGGCTTCTGGCAGCTGCAGTTTTGGCCGCCATAGCACATCTGTATACAGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGAAGAGAGATGGGATTGATTTTCGTGCTGTTTTGTTCTACCATGGCTATTTCATCTGCTCTGCAAGAAATCTTGCCAACAGAGTCTAATTACCACCAGAAAAC
TAAGACAGAAAAACATGACAAAGATGGGGTTACTAACCAGGTTGGCAGAAGATACAGTGTAAGTACGATCACCGTTTCTAATGGGATCGGTCATGGAAGCGCAGCCGGCG
GAGAAAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGAGGTACCGCCGTAATCCCAATTTATGCAGCCGGTTCGGCACAAGCACATCACCGCCAGGGTCGACCCCAC
AATGCAGGAAATCGCTATGAGAAGAACATGGGGCTTCTGGCAGCTGCAGTTTTGGCCGCCATAGCACATCTGTATACAGTTTTCTAA
Protein sequenceShow/hide protein sequence
MERREMGLIFVLFCSTMAISSALQEILPTESNYHQKTKTEKHDKDGVTNQVGRRYSVSTITVSNGIGHGSAAGGENGGGSRPHTGGGGTAVIPIYAAGSAQAHHRQGRPH
NAGNRYEKNMGLLAAAVLAAIAHLYTVF