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Lag0040402 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040402
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr13:4493935..4494324
RNA-Seq ExpressionLag0040402
SyntenyLag0040402
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010686484.1 PREDICTED: uncharacterized protein LOC104900691 [Beta vulgaris subsp. vulgaris]9.0e-0432.97Show/hide
Query:  YSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCLFWVYFYGLE
        +SP  AE  A+  G++L +R  +  + + SDC++++  L  NVS+L+E   ++ +I      F +IS+  V+RD N  AH L  +  +G E
Subjt:  YSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCLFWVYFYGLE
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.0e-0435.29Show/hide
Query:  PVSYSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCL
        P   SP  AE+  +LEGLK A   N   L+V SD  + + ++   + T  +   WV+EI+ +   F+ ISF    R  N  AH L
Subjt:  PVSYSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCL
TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248744.4e-0435.29Show/hide
Query:  PVSYSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCL
        P   SP  AE+  +LEGLK A   N   L+V SD  + + ++   + T  +   WV+EI+ +   F+ ISF    R  N  AH L
Subjt:  PVSYSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein1.5e-0440.28Show/hide
Query:  SPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRR
        SP  AE  A+   +  A +L    L V SD K +VD LN NVS LNE    ++EI+ +   F +ISF  + R
Subjt:  SPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTATCTATCTTGACCGAGTCCTGCATGGAAATTTGCATATTATACTTCAAACTTTTGATAAACTCATACCCAGTGTCCTATTCTCCGTTTAATGCAGAGGTTCT
TGCTGTGTTAGAGGGTTTAAAATTAGCTCGTCGGTTGAACATCCATTCTTTGCAGGTGGCATCTGATTGCAAGATTTTAGTTGACATGCTCAATGGGAATGTGTCAACGC
TGAATGAGGCTAGTTTTTGGGTTCTTGAAATCAAGGAAATGGCTTTCGAGTTTTCCAACATATCTTTTGTTCTTGTGCGGCGTGATAGAAATGTGCCAGCCCACTGTCTT
TTCTGGGTTTATTTCTATGGCTTAGAGATTTTCCGGATTGGCTTTTGCATGTATCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTATCTATCTTGACCGAGTCCTGCATGGAAATTTGCATATTATACTTCAAACTTTTGATAAACTCATACCCAGTGTCCTATTCTCCGTTTAATGCAGAGGTTCT
TGCTGTGTTAGAGGGTTTAAAATTAGCTCGTCGGTTGAACATCCATTCTTTGCAGGTGGCATCTGATTGCAAGATTTTAGTTGACATGCTCAATGGGAATGTGTCAACGC
TGAATGAGGCTAGTTTTTGGGTTCTTGAAATCAAGGAAATGGCTTTCGAGTTTTCCAACATATCTTTTGTTCTTGTGCGGCGTGATAGAAATGTGCCAGCCCACTGTCTT
TTCTGGGTTTATTTCTATGGCTTAGAGATTTTCCGGATTGGCTTTTGCATGTATCGGTAG
Protein sequenceShow/hide protein sequence
MSLSILTESCMEICILYFKLLINSYPVSYSPFNAEVLAVLEGLKLARRLNIHSLQVASDCKILVDMLNGNVSTLNEASFWVLEIKEMAFEFSNISFVLVRRDRNVPAHCL
FWVYFYGLEIFRIGFCMYR