CuGenDBv2

Gene ID	Lag0040434
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase I subunit like
Genome location	chr13:4749998..4750492
RNA-Seq Expression	Lag0040434
Synteny	Lag0040434
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7032002.1 hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-50

77.38

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    L S SS  SLSTRS       KF LH+     +SQ+   R RFTA +SNN NGLGGNIKEREGERNGAKGSNG DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022139143.1 uncharacterized protein LOC111010120 [Momordica charantia]

1.6e-58

81.55

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Query:  MLGFLNLPCQWNSSSLQFLSSI---SSSSSLSTRSL-RCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGF  LPCQW+S+S++ LSS    SSSS +S R++ R KFTLH+A L  +SQ+ R R+RFTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSI---SSSSSLSTRSL-RCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022957096.1 uncharacterized protein LOC111458579 [Cucurbita moschata]

6.2e-50

76.79

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    L S SS  SLSTRS       KF LH++    +SQ+   R RFTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_022993576.1 uncharacterized protein LOC111489528 [Cucurbita maxima]

1.1e-49

76.19

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    LSS SS   LSTRS       KF LH++    +SQ+   R RF A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

XP_023549272.1 uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]

5.1e-52

78.57

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    LSS SS  SLSTRS       KF LH++    +SQ+   R RFTA +SNN NGLGGNIKEREGERNGAKGSNGGDDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BFX0 uncharacterized protein LOC103489407

1.5e-46

75.3

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Query:  MLGFLNLPCQWN-SSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV
        MLGFL +P Q   S SL  L SISS SSL       KF LHH F   +  +   R RFTA +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPV
Subjt:  MLGFLNLPCQWN-SSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV

Query:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A5D3CD16 Uncharacterized protein

1.5e-46

75.3

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Query:  MLGFLNLPCQWN-SSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV
        MLGFL +P Q   S SL  L SISS SSL       KF LHH F   +  +   R RFTA +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPV
Subjt:  MLGFLNLPCQWN-SSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPV

Query:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1CF05 uncharacterized protein LOC111010120

7.9e-59

81.55

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Query:  MLGFLNLPCQWNSSSLQFLSSI---SSSSSLSTRSL-RCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGF  LPCQW+S+S++ LSS    SSSS +S R++ R KFTLH+A L  +SQ+ R R+RFTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSI---SSSSSLSTRSL-RCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1GYA2 uncharacterized protein LOC111458579

3.0e-50

76.79

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    L S SS  SLSTRS       KF LH++    +SQ+   R RFTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

A0A6J1JWP5 uncharacterized protein LOC111489528

5.1e-50

76.19

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Query:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG
        MLGFL +P QW  S    LSS SS   LSTRS       KF LH++    +SQ+   R RF A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERG
Subjt:  MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERG

Query:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
        PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Subjt:  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G40045.1 unknown protein

2.5e-17

57.69

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Query:  SSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFIL
        ++ NGN    + KE  G  N    ++ G+  KK++   F+ KW ELL +PD DN +AV L G+L WAS+QVL QLFFIS AILVAALKYSFIAALLIFIL
Subjt:  SSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFIL

Query:  ITLL
        +TLL
Subjt:  ITLL

Sequences

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CDS sequence

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ATGTTAGGGTTTCTAAATCTCCCATGCCAGTGGAATTCCTCATCTCTCCAATTTCTCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATT
CACTCTCCATCACGCCTTCCTCAGGCCGCAATCTCAAGTTCATAGAATCCGCTCGAGATTCACGGCGTTCTCGAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGG
AGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCG
GATCCGGATAACATCTTGGCGGTGGCCTTGACTGGTTTGCTGGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTTTGGCTATTTTAGTGGCGGCTCT
TAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

mRNA sequence

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Protein sequence

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MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDP
DPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

Lag0040434 (gene) of Sponge gourd (AG-4) v1 genome