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Lag0040439 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040439
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:4829699..4830052
RNA-Seq ExpressionLag0040439
SyntenyLag0040439
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO57964.1 reverse transcriptase [Corchorus capsularis]6.9e-1137.14Show/hide
Query:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL
        W PPSP  +KLNSDAA C   K + LG ++R+  G+V+ T + R+ +V D    E  AI   L+  K  G   ++ E+DS      +       WE G+L
Subjt:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL

Query:  VQEIK
        +Q+IK
Subjt:  VQEIK

XP_023880084.1 uncharacterized protein LOC111992454 [Quercus suber]6.9e-1139.42Show/hide
Query:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL
        W PP   +YKLN DA +  +   S +GAI+RNE+G VM  +  +  FVQD +  E +A R +L    +VG L L +E D+ASV   + SN  D   +G +
Subjt:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL

Query:  VQEI
        +++I
Subjt:  VQEI

XP_023927486.1 uncharacterized protein LOC112038880 [Quercus suber]2.6e-1035.51Show/hide
Query:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG
        ++W PP+ P  K+N D A+  +   + +G I+RNE+G VM  + ++I     V+ VE +A R +++  KE+GF ++E+E DS SV   I  +  D   +G
Subjt:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG

Query:  TLVQEIK
         ++Q+IK
Subjt:  TLVQEIK

XP_030924838.1 uncharacterized protein LOC115951845 [Quercus lobata]4.5e-1036.45Show/hide
Query:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG
        ++W PPS P  K N D A+  +   +  G I+RNE+G VM  + ++I     V+ VE +A R +L+  KE+GF ++ +E DS  V   I  +  DC  +G
Subjt:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG

Query:  TLVQEIK
         ++Q+IK
Subjt:  TLVQEIK

XP_030963892.1 uncharacterized protein LOC115985062 [Quercus lobata]2.6e-1038.46Show/hide
Query:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL
        W PP   +YKLN DAA+  +   S +GAI+RNE+G VM  +  +  FVQD +  E +A R +L    +VG   L +E D+ SV   + SN  D   +G +
Subjt:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL

Query:  VQEI
        +++I
Subjt:  VQEI

TrEMBL top hitse value%identityAlignment
A0A1R3GIN3 Reverse transcriptase3.4e-1137.14Show/hide
Query:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL
        W PPSP  +KLNSDAA C   K + LG ++R+  G+V+ T + R+ +V D    E  AI   L+  K  G   ++ E+DS      +       WE G+L
Subjt:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGTL

Query:  VQEIK
        +Q+IK
Subjt:  VQEIK

A0A2N9ED81 Uncharacterized protein5.7e-1136.79Show/hide
Query:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEV-GT
        W PP P  YK N D A   E+  + +G I+RN KG VM ++ +RI F Q V+A+EA A R ++   K++G   +++E DS ++   +C N + C+ + G 
Subjt:  WLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEV-GT

Query:  LVQEIK
        L+ + K
Subjt:  LVQEIK

A0A2N9G5T2 Uncharacterized protein2.6e-1135.85Show/hide
Query:  RWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGT
        +W PP   N+K N D A+  ET  + +G IVRN  G+VM ++++++++ Q V+++EA A R ++  VKE+G    E E DS +V A + S+       G 
Subjt:  RWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGT

Query:  LVQEIK
        L+++ K
Subjt:  LVQEIK

A0A2N9HRK6 Uncharacterized protein1.5e-1135.85Show/hide
Query:  RWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGT
        +W PPS  N+K N D A+  ET  + +G IVRN +G+VM ++++++++ Q V+++EA A R ++  V E+G    E E DS +V A + S   +    G 
Subjt:  RWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVGT

Query:  LVQEIK
        L++++K
Subjt:  LVQEIK

A0A2N9J4C9 Uncharacterized protein9.8e-1134.58Show/hide
Query:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG
        I W PP P  YK+N D A   ET  + +G ++RN  G VM ++ +R+ F   V+A+EA A R ++   +++GF   ++E DS +V   +C+ +      G
Subjt:  IRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG

Query:  TLVQEIK
         LV + K
Subjt:  TLVQEIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGGGAGGTAATCGATGGGATGGAATCCGGTGGTTACCGCCTAGCCCTCCTAATTACAAGCTTAATTCAGATGCAGCCTTATGTGTAGAAACGAAATCTAGTAG
TTTGGGTGCCATTGTGCGGAATGAGAAGGGAAGAGTGATGCTTACAGTGATGAGAAGGATCCAATTTGTCCAGGATGTGGATGCGGTGGAGGCCATGGCGATTCGTGATA
GTTTGATAGCAGTAAAGGAGGTCGGCTTCTTGAGATTGGAAGTGGAGACCGATTCAGCTAGCGTGGCTGCCATGATCTGCTCAAACCAGAAGGATTGCTGGGAAGTTGGA
ACCCTGGTCCAGGAGATCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGGGAGGTAATCGATGGGATGGAATCCGGTGGTTACCGCCTAGCCCTCCTAATTACAAGCTTAATTCAGATGCAGCCTTATGTGTAGAAACGAAATCTAGTAG
TTTGGGTGCCATTGTGCGGAATGAGAAGGGAAGAGTGATGCTTACAGTGATGAGAAGGATCCAATTTGTCCAGGATGTGGATGCGGTGGAGGCCATGGCGATTCGTGATA
GTTTGATAGCAGTAAAGGAGGTCGGCTTCTTGAGATTGGAAGTGGAGACCGATTCAGCTAGCGTGGCTGCCATGATCTGCTCAAACCAGAAGGATTGCTGGGAAGTTGGA
ACCCTGGTCCAGGAGATCAAATAG
Protein sequenceShow/hide protein sequence
MVGGGNRWDGIRWLPPSPPNYKLNSDAALCVETKSSSLGAIVRNEKGRVMLTVMRRIQFVQDVDAVEAMAIRDSLIAVKEVGFLRLEVETDSASVAAMICSNQKDCWEVG
TLVQEIK