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Lag0040563 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040563
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr13:6101970..6102413
RNA-Seq ExpressionLag0040563
SyntenyLag0040563
Gene Ontology termsNA
InterPro domainsIPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0777333.1 hypothetical protein [Gossypium trilobum]7.9e-0429.73Show/hide
Query:  MHVDAACDVENRHCGIGVVIRSQRGE---LKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHV
        ++ DAA  ++ +      +IR++RG+   +K+ ++  S T    +  E    A D  +V+ DI+ +   FHQI F HV+R+ N + H +AR G   + H 
Subjt:  MHVDAACDVENRHCGIGVVIRSQRGE---LKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHV

Query:  WYSNFPDWVVR
        ++      VVR
Subjt:  WYSNFPDWVVR
XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]6.1e-0426.95Show/hide
Query:  MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPL---------------CAEKERCAVDCATV-----------------VW--DIRRLSAM
        ++VD AC + N   GIGVV ++ +GE+ +A+ +    F  PL               C +     VD  +                  VW  DI   +  
Subjt:  MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPL---------------CAEKERCAVDCATV-----------------VW--DIRRLSAM

Query:  FHQINFFHVKRDFNVLVHDLARAGLYSTPH-VWYSNFPDWV
        F  I F H++R  + + H LA   + S P+ +W S FP+W+
Subjt:  FHQINFFHVKRDFNVLVHDLARAGLYSTPH-VWYSNFPDWV
TrEMBL top hitse value%identityAlignment
A0A6J1DJL6 uncharacterized protein LOC1110217112.9e-0426.95Show/hide
Query:  MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPL---------------CAEKERCAVDCATV-----------------VW--DIRRLSAM
        ++VD AC + N   GIGVV ++ +GE+ +A+ +    F  PL               C +     VD  +                  VW  DI   +  
Subjt:  MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPL---------------CAEKERCAVDCATV-----------------VW--DIRRLSAM

Query:  FHQINFFHVKRDFNVLVHDLARAGLYSTPH-VWYSNFPDWV
        F  I F H++R  + + H LA   + S P+ +W S FP+W+
Subjt:  FHQINFFHVKRDFNVLVHDLARAGLYSTPH-VWYSNFPDWV
A0A7J9EWB2 Uncharacterized protein3.8e-0429.73Show/hide
Query:  MHVDAACDVENRHCGIGVVIRSQRGE---LKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHV
        ++ DAA  ++ +      +IR++RG+   +K+ ++  S T    +  E    A D  +V+ DI+ +   FHQI F HV+R+ N + H +AR G   + H 
Subjt:  MHVDAACDVENRHCGIGVVIRSQRGE---LKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHV

Query:  WYSNFPDWVVR
        ++      VVR
Subjt:  WYSNFPDWVVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein8.4e-0425.18Show/hide
Query:  HVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPLCAEKE--RCAV-------------------------------DCATVVWDIRRLSAMFH
        + DA  + +N  CGIG V+R+++GE+K    +      S L AE E  R AV                                    + D++RL + F 
Subjt:  HVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPLCAEKE--RCAV-------------------------------DCATVVWDIRRLSAMFH

Query:  QINFFHVKRDFNVLVHDLARAGL--YSTPHVWYSNFPDW
        ++ F  + R+ N L   +AR  L   +     YS  P W
Subjt:  QINFFHVKRDFNVLVHDLARAGL--YSTPHVWYSNFPDW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTTGATGCTGCTTGTGATGTGGAGAATAGGCATTGTGGTATAGGTGTGGTGATTCGCAGTCAGAGGGGTGAACTGAAGTTAGCCTTGCAAAAAGGATCGTCTAC
GTTTACTAGCCCGTTGTGTGCTGAGAAGGAGCGGTGTGCGGTGGACTGTGCCACTGTTGTTTGGGATATTAGAAGGTTGTCCGCTATGTTCCATCAAATCAATTTTTTCC
ATGTTAAGCGGGACTTTAATGTTTTAGTTCATGATTTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTACTCCAACTTCCCAGATTGGGTTGTTAGGCTAGGT
CAATGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGTTGATGCTGCTTGTGATGTGGAGAATAGGCATTGTGGTATAGGTGTGGTGATTCGCAGTCAGAGGGGTGAACTGAAGTTAGCCTTGCAAAAAGGATCGTCTAC
GTTTACTAGCCCGTTGTGTGCTGAGAAGGAGCGGTGTGCGGTGGACTGTGCCACTGTTGTTTGGGATATTAGAAGGTTGTCCGCTATGTTCCATCAAATCAATTTTTTCC
ATGTTAAGCGGGACTTTAATGTTTTAGTTCATGATTTGGCCCGTGCGGGTTTGTATTCGACACCACATGTGTGGTACTCCAACTTCCCAGATTGGGTTGTTAGGCTAGGT
CAATGTGAGTAG
Protein sequenceShow/hide protein sequence
MHVDAACDVENRHCGIGVVIRSQRGELKLALQKGSSTFTSPLCAEKERCAVDCATVVWDIRRLSAMFHQINFFHVKRDFNVLVHDLARAGLYSTPHVWYSNFPDWVVRLG
QCE