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Lag0040575 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040575
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 1
Genome locationchr13:6186690..6189813
RNA-Seq ExpressionLag0040575
SyntenyLag0040575
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0032784 - regulation of DNA-templated transcription, elongation (biological process)
GO:0000445 - THO complex part of transcription export complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51016.1 hypothetical protein Csa_007827 [Cucumis sativus]2.6e-1892.86Show/hide
Query:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        L+ EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
XP_008460496.1 PREDICTED: THO complex subunit 1 [Cucumis melo]6.9e-1994.64Show/hide
Query:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        L+ EEFRKAILQ GPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
XP_011655214.1 THO complex subunit 1 [Cucumis sativus]2.6e-1892.86Show/hide
Query:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        L+ EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
XP_038892203.1 THO complex subunit 1 isoform X1 [Benincasa hispida]1.7e-1794.34Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        EEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
XP_038892204.1 THO complex subunit 1 isoform X2 [Benincasa hispida]1.7e-1794.34Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        EEFRKAILQ+G PENFALQTVQDVI+PQKHTKLAQDENQLLENILRRLLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
TrEMBL top hitse value%identityAlignment
A0A0A0KTL0 Uncharacterized protein1.3e-1892.86Show/hide
Query:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        L+ EEFRKAILQ GPPENFALQ VQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
A0A1S3CC63 THO complex subunit 13.4e-1994.64Show/hide
Query:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        L+ EEFRKAILQ GPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  LFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
A0A6J1CC37 THO complex subunit 11.4e-1794.34Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        EEFRKAILQ+ PPENFALQTVQ+VIRPQKHTKLAQDENQLLENILRRLLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
A0A6J1G1S6 THO complex subunit 11.8e-1794.34Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        EEFRKAILQ+GPPENFALQTVQDVI+PQK TKLAQDENQLLENILRRLLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
A0A6J1HPE8 THO complex subunit 19.1e-1792.45Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        EEFRKAILQ+ PPENFALQTVQDVI+PQK TKLAQDENQLLENILRRLLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
SwissProt top hitse value%identityAlignment
Q93VM9 THO complex subunit 11.3e-1271.7Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        + FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
Arabidopsis top hitse value%identityAlignment
AT5G09860.1 nuclear matrix protein-related9.3e-1471.7Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        + FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
AT5G09860.2 nuclear matrix protein-related9.3e-1471.7Show/hide
Query:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV
        + FR AILQ  P E FAL+TVQ  I+PQK TKLAQDENQ+LEN+LR LLQELV
Subjt:  EEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACAACGAGACAACAAGCTTCAGTCTCCAGAACGCATAAGAATTGCTCGGCTGTGCCAATTTCTGAATCTTCGACATGGTAAACTCTCACTCTACAAGTCTGGTTT
TATTCTTGTTTGGTATCTATTCAAGGAAGAGTTTCGGAAGGCCATATTGCAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGA
AGCACACAAAATTGGCACAAGATGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGGAGATGATTTTGCTGAAGTTTTCCTCTTTGGATTT
ATAAGCTTGATTTATGTCGAAGCTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTATCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGG
TCATGGATGCCTTCAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTACAACGAGACAACAAGCTTCAGTCTCCAGAACGCATAAGAATTGCTCGGCTGTGCCAATTTCTGAATCTTCGACATGGTAAACTCTCACTCTACAAGTCTGGTTT
TATTCTTGTTTGGTATCTATTCAAGGAAGAGTTTCGGAAGGCCATATTGCAATCGGGGCCACCAGAAAATTTTGCTCTGCAGACAGTTCAAGATGTTATCAGACCTCAGA
AGCACACAAAATTGGCACAAGATGAAAATCAATTGCTGGAAAATATTCTACGGCGATTACTTCAAGAATTAGTGGGAGATGATTTTGCTGAAGTTTTCCTCTTTGGATTT
ATAAGCTTGATTTATGTCGAAGCTCAGGATTTGTATTGTCTCTTGGTTCTAAATGGAATTGTCTTTATCCATTCCAACATTGATAGAATCTGGTCCCTAAAATCCTTGGG
TCATGGATGCCTTCAATTGTGA
Protein sequenceShow/hide protein sequence
MLQRDNKLQSPERIRIARLCQFLNLRHGKLSLYKSGFILVWYLFKEEFRKAILQSGPPENFALQTVQDVIRPQKHTKLAQDENQLLENILRRLLQELVGDDFAEVFLFGF
ISLIYVEAQDLYCLLVLNGIVFIHSNIDRIWSLKSLGHGCLQL