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Lag0040591 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040591
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:6341548..6342485
RNA-Seq ExpressionLag0040591
SyntenyLag0040591
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV67982.1 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein [Cephalotus follicularis]1.4e-1641.44Show/hide
Query:  KWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG
        K  K +GN IGE E  ++     +  + +RV+V +D  QPL RG    +G+ ++  W    YEKLP+FC+ CG +GH+M DC    + +E  KE+D QYG
Subjt:  KWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG

Query:  PWMREDNFIFG
        PW+R +N  FG
Subjt:  PWMREDNFIFG

MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]1.4e-1634.55Show/hide
Query:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR
        +  +EAE V  + P   D+ ++I   + G  Q  E+   +   W               AK LGNI+G FE  D+ +D  +  K LR++V MD+ +PL R
Subjt:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR

Query:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR
        G+  K+  + ++ W    YE+LP+FC+ CGRIGH M+DCE+ E          +E D  +GPW+R
Subjt:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]2.4e-1633.94Show/hide
Query:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR
        +  +EAE V+ + P   D+ ++I   + G  Q  E+   +   W               AK LGNI+G FE  D+ +D  +  K LR++V MD+ +PL R
Subjt:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR

Query:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR
        G+  K+  + ++ W    YE+LP+FC+ CGRIGH M+DCE+ +          +E D  +GPW+R
Subjt:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.4e-1635.29Show/hide
Query:  PTKIDKVMMIFEDLKGGSQIEEMSF------------------RKWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEES
        P  I K  ++  D      I+E+ F                  ++ A  +G  +GEF   DLE D +   + LRVKV+++I +PL RG M+ VG  A+E 
Subjt:  PTKIDKVMMIFEDLKGGSQIEEMSF------------------RKWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEES

Query:  WSRVTYEKLPDFCYCCGRIGHVMKDCEDEEAAKEDDLQYGPWMREDNFIFGKNRNTKEEEKKNTSRKAQG
        W  +TYE LPDFCY CGRIGH  K C  + AA E      P+ RE  +I  K +   E  +   +R++ G
Subjt:  WSRVTYEKLPDFCYCCGRIGHVMKDCEDEEAAKEDDLQYGPWMREDNFIFGKNRNTKEEEKKNTSRKAQG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.8e-1635.29Show/hide
Query:  PTKIDKVMMIFEDLKGGSQIEEMSF------------------RKWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEES
        P  I K  ++  D      I+E+ F                  ++ A  +G  +GEF   DLE D +   + LRVKV+++I +PL RG M+ VG  A+E 
Subjt:  PTKIDKVMMIFEDLKGGSQIEEMSF------------------RKWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEES

Query:  WSRVTYEKLPDFCYCCGRIGHVMKDCEDEEAAKEDDLQYGPWMREDNFIFGKNRNTKEEEKKNTSRKAQG
        W  +TYE LPDFCY CGRIGH  K C  + AA+E      P+ RE  +I  K +   E  +   +R++ G
Subjt:  WSRVTYEKLPDFCYCCGRIGHVMKDCEDEEAAKEDDLQYGPWMREDNFIFGKNRNTKEEEKKNTSRKAQG

TrEMBL top hitse value%identityAlignment
A0A1Q3BJG7 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein6.8e-1741.44Show/hide
Query:  KWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG
        K  K +GN IGE E  ++     +  + +RV+V +D  QPL RG    +G+ ++  W    YEKLP+FC+ CG +GH+M DC    + +E  KE+D QYG
Subjt:  KWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG

Query:  PWMREDNFIFG
        PW+R +N  FG
Subjt:  PWMREDNFIFG

A0A2K3MPT1 Cysteine desulfurase mitochondrial-like1.2e-1633.94Show/hide
Query:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR
        +  +EAE V+ + P   D+ ++I   + G  Q  E+   +   W               AK LGNI+G FE  D+ +D  +  K LR++V MD+ +PL R
Subjt:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR

Query:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR
        G+  K+  + ++ W    YE+LP+FC+ CGRIGH M+DCE+ +          +E D  +GPW+R
Subjt:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR

A0A2N9FT83 Reverse transcriptase domain-containing protein2.2e-1530.06Show/hide
Query:  DSNNEEAEVYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR
        D   +   V  + P   DK +++F+ L     I+++ F     W               A  +G  +G+ ER   + D    E  +RV+V+MDIT PL R
Subjt:  DSNNEEAEVYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR

Query:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCED----EEAAKEDDLQYGPWMRED
        G M+++  + ++ W    YE+L +FCY CG + H  KDC++      +   ++LQYGPW+R +
Subjt:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCED----EEAAKEDDLQYGPWMRED

A0A392M948 Zinc CCHC-type-like protein (Fragment)6.8e-1734.55Show/hide
Query:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR
        +  +EAE V  + P   D+ ++I   + G  Q  E+   +   W               AK LGNI+G FE  D+ +D  +  K LR++V MD+ +PL R
Subjt:  SNNEEAE-VYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRK---W---------------AKTLGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVR

Query:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR
        G+  K+  + ++ W    YE+LP+FC+ CGRIGH M+DCE+ E          +E D  +GPW+R
Subjt:  GAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEE--------AAKEDDLQYGPWMR

A0A803QHU2 Uncharacterized protein2.2e-1543.27Show/hide
Query:  AKTLGNIIGEF--ERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG
        A+ LGNIIGEF     D   + W     LR++VK+ +T+PL+RG M+K+    +E W    YE+LP+FC+ CG +GH  K C    E  +   +DD QYG
Subjt:  AKTLGNIIGEF--ERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYG

Query:  PWMR
        PWM+
Subjt:  PWMR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding1.5e-0529.7Show/hide
Query:  LGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYGPWMRE
        + + +GE    D  E++  +   +RVKV+MD T+PL     ++  S+ E +     YEKL   C  C R+ H +  C      EE   E D+   P   +
Subjt:  LGNIIGEFERTDLEEDSWKKEKTLRVKVKMDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDC----EDEEAAKEDDLQYGPWMRE

Query:  D
        D
Subjt:  D


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACGCTTTCTCAATCGCTCCTTGACAAAATTATCACGAGCTTTGGTTCGAGCTTGCTGAGGGCCGATGTTGACGAAAGAGAGGTAAGCTCCGACGGTGAAGAAGG
AGACTCCAACAACGAAGAAGCAGAAGTCTATGGTTCGAATCCCACTAAAATTGATAAAGTCATGATGATTTTCGAGGACCTGAAGGGTGGGAGTCAGATTGAGGAGATGA
GTTTCAGGAAATGGGCGAAGACTTTGGGAAACATAATAGGAGAGTTTGAAAGAACGGACTTGGAGGAAGATAGCTGGAAAAAGGAGAAAACGCTAAGGGTGAAAGTTAAG
ATGGACATCACACAACCTTTAGTTAGGGGCGCCATGTTGAAGGTAGGATCAAAAGCAGAGGAAAGTTGGAGCCGGGTCACCTATGAAAAACTCCCTGACTTCTGCTACTG
CTGTGGCCGAATAGGTCATGTGATGAAGGATTGTGAGGACGAAGAAGCGGCCAAAGAAGATGACCTCCAGTATGGGCCTTGGATGCGTGAGGACAACTTTATTTTTGGGA
AAAACAGAAACACAAAGGAAGAAGAAAAGAAAAACACCAGCCGAAAAGCTCAAGGAAAATTAATCAGAGGAGAAAAATCGGAAAGCGAAGAAGAAGAAGCGAGACTATCG
GAGAGAAGACAACCGGCGAAACCGTACAGCCGGCGGCGGAGAGCCCTGAATCAGCGGTGGCACGGGCCAGCGACGAGCAAGGAGGTAAAAAAGAGCCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGACGCTTTCTCAATCGCTCCTTGACAAAATTATCACGAGCTTTGGTTCGAGCTTGCTGAGGGCCGATGTTGACGAAAGAGAGGTAAGCTCCGACGGTGAAGAAGG
AGACTCCAACAACGAAGAAGCAGAAGTCTATGGTTCGAATCCCACTAAAATTGATAAAGTCATGATGATTTTCGAGGACCTGAAGGGTGGGAGTCAGATTGAGGAGATGA
GTTTCAGGAAATGGGCGAAGACTTTGGGAAACATAATAGGAGAGTTTGAAAGAACGGACTTGGAGGAAGATAGCTGGAAAAAGGAGAAAACGCTAAGGGTGAAAGTTAAG
ATGGACATCACACAACCTTTAGTTAGGGGCGCCATGTTGAAGGTAGGATCAAAAGCAGAGGAAAGTTGGAGCCGGGTCACCTATGAAAAACTCCCTGACTTCTGCTACTG
CTGTGGCCGAATAGGTCATGTGATGAAGGATTGTGAGGACGAAGAAGCGGCCAAAGAAGATGACCTCCAGTATGGGCCTTGGATGCGTGAGGACAACTTTATTTTTGGGA
AAAACAGAAACACAAAGGAAGAAGAAAAGAAAAACACCAGCCGAAAAGCTCAAGGAAAATTAATCAGAGGAGAAAAATCGGAAAGCGAAGAAGAAGAAGCGAGACTATCG
GAGAGAAGACAACCGGCGAAACCGTACAGCCGGCGGCGGAGAGCCCTGAATCAGCGGTGGCACGGGCCAGCGACGAGCAAGGAGGTAAAAAAGAGCCGTTAG
Protein sequenceShow/hide protein sequence
MVTLSQSLLDKIITSFGSSLLRADVDEREVSSDGEEGDSNNEEAEVYGSNPTKIDKVMMIFEDLKGGSQIEEMSFRKWAKTLGNIIGEFERTDLEEDSWKKEKTLRVKVK
MDITQPLVRGAMLKVGSKAEESWSRVTYEKLPDFCYCCGRIGHVMKDCEDEEAAKEDDLQYGPWMREDNFIFGKNRNTKEEEKKNTSRKAQGKLIRGEKSESEEEEARLS
ERRQPAKPYSRRRRALNQRWHGPATSKEVKKSR