; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040691 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040691
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:7359249..7361054
RNA-Seq ExpressionLag0040691
SyntenyLag0040691
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-3435.24Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N  DS  W L+S+  +TV S+ + L     +       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-3535.68Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L  L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N +DS +W L+S+  +TV S+ + L   + S       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-3334.25Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+++I +K Y+      +P      S+ S WK++ N I      I  ++ +G   SFW D W  + PL ++ P L  L+T    S+ ++WN + K W++
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQRR
         + R L + E   W N+   L T +         W L+S+N F   S+ ++L  ++ S  N   +L+  +WK  +PKK K F+W L HG IN ADRLQ+R
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQRR

Query:  MPNYFLSPSWCVVCCLNEE
        +PN+ LSP+WC +C  ++E
Subjt:  MPNYFLSPSWCVVCCLNEE

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-3434.8Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E+  WA L + ++     N +DS  W L+S+  +TV S+ + L     S       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+P     PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.2e-3435.24Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N  DS  W L+S+  +TV S+ + L     +       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.0e-3435.24Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N  DS  W L+S+  +TV S+ + L     +       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.6e-3535.68Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L  L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N +DS +W L+S+  +TV S+ + L   + S       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.8e-3434.25Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+++I +K Y+      +P      S+ S WK++ N I      I  ++ +G   SFW D W  + PL ++ P L  L+T    S+ ++WN + K W++
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQRR
         + R L + E   W N+   L T +         W L+S+N F   S+ ++L  ++ S  N   +L+  +WK  +PKK K F+W L HG IN ADRLQ+R
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQRR

Query:  MPNYFLSPSWCVVCCLNEE
        +PN+ LSP+WC +C  ++E
Subjt:  MPNYFLSPSWCVVCCLNEE

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.0e-3434.8Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E+  WA L + ++     N +DS  W L+S+  +TV S+ + L     S       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+P     PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.0e-3435.24Show/hide
Query:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL
        LW+KII+AK Y +      P      SS+S W SIC  ++     +  ++ NG   SFW+  W  + PL   YP L+ L+T    SI ++WN+    WDL
Subjt:  LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDL

Query:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR
          RR L E E   WA L + L+     N  DS  W L+S+  +TV S+ + L     +       N F  +WK   PKK   F+W L +  +N A++L +
Subjt:  GLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQR

Query:  RMPNYFLSPSWCVVCCLNEESQIDYYV
        R+PN    PSWCV+C  N+E +I  ++
Subjt:  RMPNYFLSPSWCVVCCLNEESQIDYYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCACGTTTGTTTAGATTATCTTTGCGTCCAAATGCCTCAGTCGTAGAGGTCTTGAATAGTTCTCAGGCGGCTTGGGATTTGAGTCTTCAATGGAATCTTACTGA
GTTGGAGATGCTTGAATGGTCTAATCTTTCCAATCTTCTTTCACCTATTGCATTAAGCCTATGGAGAAAAATTATTTCTGCTAAGTTTTACAATGCTGCTGGATTTTGTT
GGTGGCCAAAGCCCATCATGGGAGGGTCATCAAAATCCCTTTGGAAATCTATTTGTAATACAATTGATGTTGTGGGTAGTCGAATTAAAAAACGGCTTGGCAATGGTATG
CATACATCTTTTTGGAATGATATATGGCTTGACAGTGTTCCTCTTAAAATATCATATCCTCATCTTCATCGGTTAGCTACCCGACCTATGGATTCAATTGCTGAAGTTTG
GAACTCCGCATCTAAAGCGTGGGATTTGGGCCTCCGTCGAAATCTAAATGAGGAGGAGATTATGGAATGGGCCAATCTTTCTCATCTCCTTTCTACAGTCATCCTAAGAA
ATGTCCAAGATTCTTGGTCATGGCCTCTTGATTCTTCTAATACTTTTACAGTCAAATCTTTGATGGAAGAGTTAGTTCATTCAAATGGATCATCTCGAAACAATCTGTTT
TCGATAATTTGGAAGGATCAATACCCAAAGAAGATCAAAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACCCAGCTGATAGACTTCAAAGAAGAATGCCTAATTA
TTTTCTCTCCCCTTCCTGGTGTGTTGTGTGTTGTTTAAATGAGGAAAGCCAAATTGACTATTATGTTGGGAACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCACGTTTGTTTAGATTATCTTTGCGTCCAAATGCCTCAGTCGTAGAGGTCTTGAATAGTTCTCAGGCGGCTTGGGATTTGAGTCTTCAATGGAATCTTACTGA
GTTGGAGATGCTTGAATGGTCTAATCTTTCCAATCTTCTTTCACCTATTGCATTAAGCCTATGGAGAAAAATTATTTCTGCTAAGTTTTACAATGCTGCTGGATTTTGTT
GGTGGCCAAAGCCCATCATGGGAGGGTCATCAAAATCCCTTTGGAAATCTATTTGTAATACAATTGATGTTGTGGGTAGTCGAATTAAAAAACGGCTTGGCAATGGTATG
CATACATCTTTTTGGAATGATATATGGCTTGACAGTGTTCCTCTTAAAATATCATATCCTCATCTTCATCGGTTAGCTACCCGACCTATGGATTCAATTGCTGAAGTTTG
GAACTCCGCATCTAAAGCGTGGGATTTGGGCCTCCGTCGAAATCTAAATGAGGAGGAGATTATGGAATGGGCCAATCTTTCTCATCTCCTTTCTACAGTCATCCTAAGAA
ATGTCCAAGATTCTTGGTCATGGCCTCTTGATTCTTCTAATACTTTTACAGTCAAATCTTTGATGGAAGAGTTAGTTCATTCAAATGGATCATCTCGAAACAATCTGTTT
TCGATAATTTGGAAGGATCAATACCCAAAGAAGATCAAAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACCCAGCTGATAGACTTCAAAGAAGAATGCCTAATTA
TTTTCTCTCCCCTTCCTGGTGTGTTGTGTGTTGTTTAAATGAGGAAAGCCAAATTGACTATTATGTTGGGAACTTTTGA
Protein sequenceShow/hide protein sequence
MFSRLFRLSLRPNASVVEVLNSSQAAWDLSLQWNLTELEMLEWSNLSNLLSPIALSLWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGM
HTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRNNLF
SIIWKDQYPKKIKIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYVGNF