; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040705 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040705
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionexosome complex component RRP41 homolog
Genome locationchr13:7505446..7506775
RNA-Seq ExpressionLag0040705
SyntenyLag0040705
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0004527 - exonuclease activity (molecular function)
GO:0009022 - tRNA nucleotidyltransferase activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX95793.1 3'-5'-exoribonuclease family protein isoform 1 [Theobroma cacao]2.3e-6193.85Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRPMEMRQIRAEIGTV++ADGSAVFEMGNTKVIAAVYGP+EVQNRSQQ+S+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTME CILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

OMO64353.1 hypothetical protein CCACVL1_21832 [Corchorus capsularis]1.3e-6193.85Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRP+EMRQ+RAEIGTVSKADGSAVFEMGNTKVIAAVYGP+EVQNRSQQM++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTME CILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

XP_022157614.1 exosome complex component RRP41 homolog [Momordica charantia]1.0e-6194.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIG VSKADGSAVFEMGNTKVIAAVYGP+EVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIF+QVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

XP_022941604.1 exosome complex component RRP41 homolog [Cucurbita moschata]1.9e-6396.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIG VSKADGSA+FEMGNTKV+AAVYGP+EVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

XP_038891797.1 exosome complex component RRP41 homolog [Benincasa hispida]3.2e-6396.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIG VSKA+GSAVFEMGNTKV+AAVYGP+EVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

TrEMBL top hitse value%identityAlignment
A0A061E0L1 3'-5'-exoribonuclease family protein isoform 11.1e-6193.85Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRPMEMRQIRAEIGTV++ADGSAVFEMGNTKVIAAVYGP+EVQNRSQQ+S+QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTME CILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

A0A1R3H1X4 Uncharacterized protein6.5e-6293.85Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        ME+VSPEGLRLDGRRP+EMRQ+RAEIGTVSKADGSAVFEMGNTKVIAAVYGP+EVQNRSQQM++QALVRCEY+MANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTME CILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

A0A6J1DWZ5 exosome complex component RRP41 homolog5.0e-6294.62Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLR DGRRPMEMRQIR EIG VSKADGSAVFEMGNTKVIAAVYGP+EVQNRSQQ+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIF+QVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

A0A6J1FNX1 exosome complex component RRP41 homolog9.1e-6496.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIG VSKADGSA+FEMGNTKV+AAVYGP+EVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

A0A6J1JKC7 exosome complex component RRP41 homolog9.1e-6496.92Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
        MEFVSPEGLRLDGRRPMEMRQIRAEIG VSKADGSA+FEMGNTKV+AAVYGP+EVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIR

Query:  QTMEECILTHLMPRSQIDIFVQVLQADGGT
        QTMEECILTHLMPRSQIDIFVQVLQADGGT
Subjt:  QTMEECILTHLMPRSQIDIFVQVLQADGGT

SwissProt top hitse value%identityAlignment
Q7YRA3 Exosome complex component RRP412.7e-3656.49Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK +A VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQT E  ILT L PRSQIDI+VQVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

Q921I9 Exosome complex component RRP419.1e-3757.25Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK +A VYGP E++ +RS+ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQT E  ILT L PRSQIDI+VQVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

Q975G8 Exosome complex component Rrp412.0e-3156.1Show/hide
Query:  GLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECI
        GLRLDGR+P EMR I+ E+G +  ADGSA+FEMGNTKVIAAVYGPKE+  R   + ++A++R  Y M  FST +R + P   RR  E+S VIR+ +E  I
Subjt:  GLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECI

Query:  LTHLMPRSQIDIFVQVLQADGGT
        L  L PR+ ID+F++VLQAD GT
Subjt:  LTHLMPRSQIDIFVQVLQADGGT

Q9NPD3 Exosome complex component RRP412.7e-3656.49Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        +E +S +G R+DGRR  E+R+I+A +G  ++ADGSA  E GNTK +A VYGP E++ +R++ + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQ-NRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQT E  ILT L PRSQIDI+VQVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

Q9SP08 Exosome complex component RRP41 homolog4.2e-5079.39Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSAVFEMGNTKVIAAVYGP+E+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQTME CILT LMP SQIDIF+QVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein1.0e-0626.02Show/hide
Query:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKV+AAVYGPK    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTI
        T + P +   + +QV+  DG  +
Subjt:  THLMPRSQIDIFVQVLQADGGTI

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein1.0e-0626.02Show/hide
Query:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL
        R DGR P ++R +      + +  GSA +  G+TKV+AAVYGPK    +++              A F    + +  +  +   E  +++++T++  C+L
Subjt:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CIL

Query:  THLMPRSQIDIFVQVLQADGGTI
        T + P +   + +QV+  DG  +
Subjt:  THLMPRSQIDIFVQVLQADGGTI

AT3G61620.1 3'-5'-exoribonuclease family protein3.0e-5179.39Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSAVFEMGNTKVIAAVYGP+E+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQTME CILT LMP SQIDIF+QVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

AT3G61620.2 3'-5'-exoribonuclease family protein3.0e-5179.39Show/hide
Query:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI
        ME+V+PEGLRLDGRR  EMRQI AE+G VSKADGSAVFEMGNTKVIAAVYGP+E+QN+SQQ  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVI
Subjt:  MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVI

Query:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT
        RQTME CILT LMP SQIDIF+QVLQADGGT
Subjt:  RQTMEECILTHLMPRSQIDIFVQVLQADGGT

AT4G27490.1 3'-5'-exoribonuclease family protein2.6e-1030.65Show/hide
Query:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT
        R DGR   + R    + G VS A GSA  E GNTKVI +V+GP+E   ++   S+   + C  +  NF++    +         E S ++ + +E  I+ 
Subjt:  RLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILT

Query:  HLMPRSQIDIFVQVLQADGGTIKV
           P++ +D+F  VL++ G  + V
Subjt:  HLMPRSQIDIFVQVLQADGGTIKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCTTAGACGGTCGCCGTCCCATGGAGATGAGGCAAATTCGAGCAGAAATTGGCACCGTTTCTAAAGCAGATGGTTCTGCTGT
TTTTGAGATGGGTAACACCAAAGTTATTGCTGCTGTGTATGGTCCGAAAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCTCTGGTGCGCTGTGAATACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAACCCAAGGGTGACAGGCGATCCACAGAGATATCTTTAGTTATTCGTCAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACAATTAAAGTTAATGATCAAGTCTATCAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCGTGAGCCCTGAAGGACTTCGCTTAGACGGTCGCCGTCCCATGGAGATGAGGCAAATTCGAGCAGAAATTGGCACCGTTTCTAAAGCAGATGGTTCTGCTGT
TTTTGAGATGGGTAACACCAAAGTTATTGCTGCTGTGTATGGTCCGAAAGAGGTTCAGAATAGGAGTCAACAAATGAGCAACCAAGCTCTGGTGCGCTGTGAATACACCA
TGGCTAATTTCAGTACTGGAGATCGCATGAGAAAACCCAAGGGTGACAGGCGATCCACAGAGATATCTTTAGTTATTCGTCAGACAATGGAGGAATGCATTCTAACACAT
TTAATGCCTCGGTCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACAATTAAAGTTAATGATCAAGTCTATCAGATATAG
Protein sequenceShow/hide protein sequence
MEFVSPEGLRLDGRRPMEMRQIRAEIGTVSKADGSAVFEMGNTKVIAAVYGPKEVQNRSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTH
LMPRSQIDIFVQVLQADGGTIKVNDQVYQI