; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040726 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040726
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr13:7714176..7717967
RNA-Seq ExpressionLag0040726
SyntenyLag0040726
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.3e-5354.55Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P    ++K NP + EH+S            +I++VM+T+  T E+RM E+++ +N LMKA+E++D +IA LK  IE++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS T  IKN +KGK I+Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK YTKRI+N+R   GYQPPKFQQFDGK NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTL
        TCE AGTR DLLVKQF RTL
Subjt:  TCENAGTREDLLVKQFARTL

KAA0048375.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.1e-5354.09Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P D  ++K NP + EH+S            +I++VM+T+  T E+RM E+++ +N LMKA+E++D +IA LK  I+++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS T+ IKN +KGK I+Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK Y KRI+N+R   GYQPPKFQQFD K NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTL
        TCE AGTREDLLVKQF RTL
Subjt:  TCENAGTREDLLVKQFARTL

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-5257.28Show/hide
Query:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD
        P    ++K NPL+ ++DS           D+++VMM +   +E  M EM+  IN LMK ++++D +IA LK Q++ +  AESSQT V+K  DKGK +VQ+
Subjt:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD

Query:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL
        +QP Q S SVASLS+QQLQDMITN IRAQYGGP+Q S +YSK YTKRI+NLR  +GYQPPKFQQFDGK NPKQH+AHFVETCENAG+R D LV+QF R+L
Subjt:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL

Query:  NAGTRE
             E
Subjt:  NAGTRE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.0e-5256.8Show/hide
Query:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD
        P    ++K NPL+ ++DS           D+++VMM +   +E  M EM+  IN LMK ++++D +IA LK Q++ +  AESSQT V+K  DKGK +VQ+
Subjt:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD

Query:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL
        +QP Q S SVASLS+QQLQDMIT+ IRAQYGGP+Q S +YSK YTKRI+NLR  +GYQPPKFQQFDGK NPKQH+AHFVETCENAG+R D LV+QF R+L
Subjt:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL

Query:  NAGTRE
             E
Subjt:  NAGTRE

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-5257.28Show/hide
Query:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD
        P    ++K NPL+ ++DS           D+++VMM +   +E  M EM+  IN LMK ++++D +IA LK Q++ +  AESSQT V+K  DKGK +VQ+
Subjt:  PNDKFLVKYNPLF-EHDS-----------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD

Query:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL
        +QP Q S SVASLS+QQLQDMITN IRAQYGGP+Q S +YSK YTKRI+NLR  +GYQPPKFQQFDGK NPKQH+AHFVETCENAG+R D LV+QF R+L
Subjt:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL

Query:  NAGTRE
             E
Subjt:  NAGTRE

TrEMBL top hitse value%identityAlignment
A0A5A7SXL9 Ty3-gypsy retrotransposon protein4.4e-5257.28Show/hide
Query:  PNDKFLVKYNPLFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD
        P    +++ NPLF + +            ++V+VMM +  T E  +TEM+  IN LMK IE++D +IA LK Q++     ESSQT V+K  DKGK +VQ+
Subjt:  PNDKFLVKYNPLFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQD

Query:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL
        +QP Q S SVASLS+QQLQDMI N IRAQYGGP Q S +YSK YTKRI+NLR  +GYQPPKFQQFDG+ NPKQHIAHFVETCENAG+R D LVKQF R+L
Subjt:  DQP-QSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTREDLLVKQFARTL

Query:  NAGTRE
             E
Subjt:  NAGTRE

A0A5A7TZU9 Ribonuclease H6.1e-5454.55Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P    ++K NP + EH+S            +I++VM+T+  T E+RM E+++ +N LMKA+E++D +IA LK  IE++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS T  IKN +KGK I+Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK YTKRI+N+R   GYQPPKFQQFDGK NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTL
        TCE AGTR DLLVKQF RTL
Subjt:  TCENAGTREDLLVKQFARTL

A0A5A7V3R7 Ty3-gypsy retrotransposon protein3.3e-5253.64Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P    ++K NP + EH S            +I++VM+T   T E RM E++E +N LMK +E++D +IA LK  IE++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS    +KN DKGK ++Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK YTKRI NLR   GYQPPKFQQFDGK NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTL
        TCE AGTR DLLVKQF +TL
Subjt:  TCENAGTREDLLVKQFARTL

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class1.0e-5354.09Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P D  ++K NP + EH+S            +I++VM+T+  T E+RM E+++ +N LMKA+E++D +IA LK  I+++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNP-LFEHDS------------DIVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS T+ IKN +KGK I+Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK Y KRI+N+R   GYQPPKFQQFD K NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTL
        TCE AGTREDLLVKQF RTL
Subjt:  TCENAGTREDLLVKQFARTL

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.0e-5251.77Show/hide
Query:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNPLF-------EHDSD------IVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI
        + KN W  +S+P        P    ++K NP         EH S+      I++VM+T+  T E RM E+++ +N LMK +E++D +IA LK  IE++  
Subjt:  IPKNPW-SVSRPRNNLAGAYPNDKFLVKYNPLF-------EHDSD------IVTVMMTETRTMEERMTEMQEHINNLMKAIEKKDSQIAQLKCQIENQHI

Query:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE
        AESS    +KN DKGK ++Q+ QPQ+S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSK YTKRI+NLR   GYQPPKFQ+FDGK NPKQH+AHF+E
Subjt:  AESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPKQHIAHFVE

Query:  TCENAGTREDLLVKQFARTLNAGTRE
        TCE A TR DLLVKQF RTL     E
Subjt:  TCENAGTREDLLVKQFARTLNAGTRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCATCTTTTGGCCCGAAAGGCTTGTGAAACACAGGAGTCTAAAAGCTGGACTAATTTCTTTCCCGAGTGGCTTTTATCTGTAAACGCTAGGAATACTAGAGATGT
TCAGAACACTGGTGGGGGATCCTGTCCTATCAGTGTTATCCCGTTGGGAGCAATTGCTCTTTCATATACTACTAATATACCTGTTAATATACCAACAAGGGCAATTTTGG
ACCACTCCGATGTACAAGGAGCTGACGAGGACAATCGAGGAGAAATCGGGTTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACAGGCCAAGACCGAAGGGGTT
GGGTTTTTGGCCCGACCCCCTGCTCGGCCTTGGCCATGGGCAGAGGCCGAGCCCGTTCGACTCCGCTTAGTCCCTACCACCTTTGGTCGCCCCGGTTCCGCATGGTTTGT
CCCGAAACGCCTCCGAATTCCTAAAAACCCTTGGAGCGTGAGCAGGCCAAGAAACAACCTTGCAGGGGCATATCCTAATGACAAATTTCTTGTTAAGTATAACCCTCTAT
TTGAACATGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAGCACATCAACAACTTGATGAAGGCGATTGAA
AAAAAAGATTCTCAAATCGCACAACTAAAGTGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCACGACAAAGGAAAGACTATAGT
GCAAGATGATCAGCCACAGAGTTCTGCTTCGGTTGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAG
ATTCCCTCTTGTATTCCAAACTTTATACTAAAAGGATTAATAACTTGAGAACGTCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGACAATCCTAAA
CAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGAGGACCTACTAGTCAAGCAGTTCGCTCGAACACTTAACGCTGGTACTCGAGAGGACCTACT
AGTCAAGCAGTTCGCTCGAACACTTAAATGCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCATCTTTTGGCCCGAAAGGCTTGTGAAACACAGGAGTCTAAAAGCTGGACTAATTTCTTTCCCGAGTGGCTTTTATCTGTAAACGCTAGGAATACTAGAGATGT
TCAGAACACTGGTGGGGGATCCTGTCCTATCAGTGTTATCCCGTTGGGAGCAATTGCTCTTTCATATACTACTAATATACCTGTTAATATACCAACAAGGGCAATTTTGG
ACCACTCCGATGTACAAGGAGCTGACGAGGACAATCGAGGAGAAATCGGGTTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGACAGGCCAAGACCGAAGGGGTT
GGGTTTTTGGCCCGACCCCCTGCTCGGCCTTGGCCATGGGCAGAGGCCGAGCCCGTTCGACTCCGCTTAGTCCCTACCACCTTTGGTCGCCCCGGTTCCGCATGGTTTGT
CCCGAAACGCCTCCGAATTCCTAAAAACCCTTGGAGCGTGAGCAGGCCAAGAAACAACCTTGCAGGGGCATATCCTAATGACAAATTTCTTGTTAAGTATAACCCTCTAT
TTGAACATGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAAGAGCACATCAACAACTTGATGAAGGCGATTGAA
AAAAAAGATTCTCAAATCGCACAACTAAAGTGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCACGACAAAGGAAAGACTATAGT
GCAAGATGATCAGCCACAGAGTTCTGCTTCGGTTGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAG
ATTCCCTCTTGTATTCCAAACTTTATACTAAAAGGATTAATAACTTGAGAACGTCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGACAATCCTAAA
CAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGAGGACCTACTAGTCAAGCAGTTCGCTCGAACACTTAACGCTGGTACTCGAGAGGACCTACT
AGTCAAGCAGTTCGCTCGAACACTTAAATGCTTTTGA
Protein sequenceShow/hide protein sequence
MAHLLARKACETQESKSWTNFFPEWLLSVNARNTRDVQNTGGGSCPISVIPLGAIALSYTTNIPVNIPTRAILDHSDVQGADEDNRGEIGLGDGPKRRNRQVGQAKTEGV
GFLARPPARPWPWAEAEPVRLRLVPTTFGRPGSAWFVPKRLRIPKNPWSVSRPRNNLAGAYPNDKFLVKYNPLFEHDSDIVTVMMTETRTMEERMTEMQEHINNLMKAIE
KKDSQIAQLKCQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQSSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKLYTKRINNLRTSIGYQPPKFQQFDGKDNPK
QHIAHFVETCENAGTREDLLVKQFARTLNAGTREDLLVKQFARTLKCF