; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040779 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040779
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr13:8190003..8191384
RNA-Seq ExpressionLag0040779
SyntenyLag0040779
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]1.6e-4954.95Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF
        NL+S+ LDSTN+VLWKFQ++ +LK+HKLF +VDGT   P+    +    PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K +
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF

Query:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
        SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4955.49Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQP-PRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF
        NL+S+ LDSTNYVLWKFQ++ LLK+HKLF ++DGT            QP P  NP ++ W+ +DQAL+T+INATL+   L+YV+G  TSK+VW+ L K +
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQP-PRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF

Query:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
        SSS+R+N++ LKS+LQ+ISK+S ESID Y++R+KEI +KLA VS +++ EDL+IY +NGLP+ YN F+TS+RTRS  +TF+E
Subjt:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]3.6e-4953.8Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK
        NL+S+ LDSTN+VLWKFQ++ +LK+HKL+ ++DGT   P     S      PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK

Query:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         +SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]1.6e-4954.95Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF
        NL+S+ LDSTN+VLWKFQ++ +LK+HKLF +VDGT   P+    +    PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K +
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHF

Query:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
        SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  SSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

XP_022158689.1 uncharacterized protein LOC111025150 [Momordica charantia]3.3e-5053.23Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAII-----RSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTL
        NLVS+ LDS+N+VLWKFQ++ +LK+HKL+ ++DG+   P   +      S   PP  NP    W  +D AL+TL+NA L+ + L+YV+GC +S++VW TL
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAII-----RSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTL

Query:  EKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         KH+SSS+RTN++ LKS+LQSISK+ G SID YV+R+KE+ +KLA V V++D EDL+IYT+N LP  +N F+TS+RTRSQS++F+E
Subjt:  EKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X21.7e-4953.8Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK
        NL+S+ LDSTN+VLWKFQ++ +LK+HKL+ ++DGT   P     S      PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK

Query:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         +SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X11.7e-4953.8Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK
        NL+S+ LDSTN+VLWKFQ++ +LK+HKL+ ++DGT   P     S      PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK

Query:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         +SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

A0A5D3CLI6 T4.51.7e-4953.8Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK
        NL+S+ LDSTN+VLWKFQ++ +LK+HKL+ ++DGT   P     S      PP+ NP +E W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEK

Query:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         +SS +R+N++ LKS+LQ+I K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF+E
Subjt:  HFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

A0A6J1D9L6 uncharacterized protein LOC1110188921.7e-4952.82Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRS----EGQP------PRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKE
        NLVS+ LDST+++LWKFQ++ +LK+HKLF ++DG+V AP   + S    E QP      P +NP  E W  +DQAL+TLINATL+   L+YV+   TSK+
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRS----EGQP------PRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKE

Query:  VWDTLEKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDERYTF
        VW+ LEKH+SS++RTN++ LKS+LQSI K++ ESID YV+R+KEI +K A VS+ I+ E L+IY +NGL + YN   TS+RTR+QS++F+E + F
Subjt:  VWDTLEKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDERYTF

A0A6J1E049 uncharacterized protein LOC1110251501.6e-5053.23Show/hide
Query:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAII-----RSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTL
        NLVS+ LDS+N+VLWKFQ++ +LK+HKL+ ++DG+   P   +      S   PP  NP    W  +D AL+TL+NA L+ + L+YV+GC +S++VW TL
Subjt:  NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAII-----RSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTL

Query:  EKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE
         KH+SSS+RTN++ LKS+LQSISK+ G SID YV+R+KE+ +KLA V V++D EDL+IYT+N LP  +N F+TS+RTRSQS++F+E
Subjt:  EKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGTACATAGGGTCAACCTGGTTTCCGTTCATCTCGATTCGACGAACTATGTTCTGTGGAAGTTCCAGATCTCACCGCTATTGAAATCGCACAAGCTCTTTAAGTA
TGTCGATGGCACGGTTGTTGCTCCTGAAGCCATCATCCGATCTGAAGGACAGCCACCGCGAGTCAATCCTGAACATGAAGTGTGGTATGAACGCGATCAGGCGCTAATCA
CTTTGATTAACGCTACATTGACTCAGACGACCTTATCCTATGTCATTGGGTGCAAGACTTCTAAGGAGGTATGGGACACTCTGGAAAAACACTTCTCCTCCTCCACTCGC
ACCAATATCATTGGTCTTAAGTCTGAATTGCAGAGCATTTCAAAACAGTCAGGCGAATCTATTGATACATATGTTCGTCGAGTCAAGGAGATATTCAACAAATTAGCTGT
TGTTTCTGTGATAATCGATGCGGAAGATTTAATAATCTACACGGTCAATGGCTTGCCATCCACCTACAATGTCTTCAAAACTTCTCTACGTACTCGGTCTCAGAGTCTTA
CATTTGATGAGCGTTACACATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGTACATAGGGTCAACCTGGTTTCCGTTCATCTCGATTCGACGAACTATGTTCTGTGGAAGTTCCAGATCTCACCGCTATTGAAATCGCACAAGCTCTTTAAGTA
TGTCGATGGCACGGTTGTTGCTCCTGAAGCCATCATCCGATCTGAAGGACAGCCACCGCGAGTCAATCCTGAACATGAAGTGTGGTATGAACGCGATCAGGCGCTAATCA
CTTTGATTAACGCTACATTGACTCAGACGACCTTATCCTATGTCATTGGGTGCAAGACTTCTAAGGAGGTATGGGACACTCTGGAAAAACACTTCTCCTCCTCCACTCGC
ACCAATATCATTGGTCTTAAGTCTGAATTGCAGAGCATTTCAAAACAGTCAGGCGAATCTATTGATACATATGTTCGTCGAGTCAAGGAGATATTCAACAAATTAGCTGT
TGTTTCTGTGATAATCGATGCGGAAGATTTAATAATCTACACGGTCAATGGCTTGCCATCCACCTACAATGTCTTCAAAACTTCTCTACGTACTCGGTCTCAGAGTCTTA
CATTTGATGAGCGTTACACATTTTAA
Protein sequenceShow/hide protein sequence
MVVHRVNLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTR
TNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDERYTF