; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040801 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040801
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr13:8495292..8496365
RNA-Seq ExpressionLag0040801
SyntenyLag0040801
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RUS79541.1 hypothetical protein EGW08_012709, partial [Elysia chlorotica]8.6e-0429.05Show/hide
Query:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIP-GVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSH
        G PR          G PR+FPS +S    +P    +L     G  +          G PR          G PR+ PS +S   G PR+ PS +SS    
Subjt:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIP-GVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSH

Query:  PRGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPS
         R   +      G PR+FP  +S      R   +      G PR+FPS
Subjt:  PRGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPS

XP_040551304.1 DNA-directed RNA polymerase II subunit RPB1-like isoform X1 [Gallus gallus]2.0e-0831.29Show/hide
Query:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSHP
        GHP+  ++ L  G G P+  PS            TL  G  G  K  P  L    GHP+   + L  G+G+P+  PS+ S   G P+  PS+ S  + HP
Subjt:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSHP

Query:  RGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPSLSSSCCIHPEGAYSLL
        +   + LG G+G P+   S       H +   + LG G+G+P+  PS S      P+   S+L
Subjt:  RGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPSLSSSCCIHPEGAYSLL

XP_040551305.1 DNA-directed RNA polymerase II subunit RPB1-like isoform X2 [Gallus gallus]2.0e-0831.29Show/hide
Query:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSHP
        GHP+  ++ L  G G P+  PS            TL  G  G  K  P  L    GHP+   + L  G+G+P+  PS+ S   G P+  PS+ S  + HP
Subjt:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSHP

Query:  RGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPSLSSSCCIHPEGAYSLL
        +   + LG G+G P+   S       H +   + LG G+G+P+  PS S      P+   S+L
Subjt:  RGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPSLSSSCCIHPEGAYSLL

TrEMBL top hitse value%identityAlignment
A0A1B8XZD6 Uncharacterized protein (Fragment)4.2e-0431.94Show/hide
Query:  GEKLGEVKEIPGPLFKRHGHPRGAYTLLGKSLGRP-RKFPGLSSSVMVIPGVRTLFWGKAWG---GLGNSRASLQASWLSQGCVHSSGEKLGEVKEIPGP
        G+ LG+V EI  PL K               +G+P  K PG+  S+   PG+     GK       +G   A           VH  G+ L +V EI  P
Subjt:  GEKLGEVKEIPGPLFKRHGHPRGAYTLLGKSLGRP-RKFPGLSSSVMVIPGVRTLFWGKAWG---GLGNSRASLQASWLSQGCVHSSGEKLGEVKEIPGP

Query:  LFKRH--GHPRGAYTLLGKSLGEAKEIPGPLFKRH--GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGK-LGEAKEIPGPLFK
        L K H  G P G    +GK LGE  EI  PL K H  G P G    + K L +  +     + V  I        GK L +  EI  PL K
Subjt:  LFKRH--GHPRGAYTLLGKSLGEAKEIPGPLFKRH--GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGK-LGEAKEIPGPLFK

A0A1B8XZH4 Uncharacterized protein (Fragment)6.4e-0536.36Show/hide
Query:  VHSSGEKLGEVKEIPGPLFK--RHGHPRGAYTLLGKSL------GRP-RKFPGLSSSVMVIPGVRTLFWGKAWG---GLGNSRASLQASWLSQGCVHSSG
        V   G+ LG+V EI  PL K    G P G    +GK L      G+P  K PG+  S+   PG+     GK       +G   A           VH  G
Subjt:  VHSSGEKLGEVKEIPGPLFK--RHGHPRGAYTLLGKSL------GRP-RKFPGLSSSVMVIPGVRTLFWGKAWG---GLGNSRASLQASWLSQGCVHSSG

Query:  EKLGEVKEIPGPLFKRH--GHPRGAYTLLGKSLGEAKEIPGPLFKRH--GHPRG
        + L +V EI  PL K H  G P G    +GK LGE  EI  PL K H  G P G
Subjt:  EKLGEVKEIPGPLFKRH--GHPRGAYTLLGKSLGEAKEIPGPLFKRH--GHPRG

A0A3S0ZP94 Uncharacterized protein (Fragment)4.2e-0429.05Show/hide
Query:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIP-GVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSH
        G PR          G PR+FPS +S    +P    +L     G  +          G PR          G PR+ PS +S   G PR+ PS +SS    
Subjt:  GHPRGAYTFLGKGLGRPRKFPSLSSSVMVIP-GVRTLFWGKLGEAKEIPGPLFKRHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSH

Query:  PRGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPS
         R   +      G PR+FP  +S      R   +      G PR+FPS
Subjt:  PRGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTC
TTCTGGGGAAAAGCTTGGGGAGGTCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCAA
GGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTTTTCTGGGGAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCG
TCATGGTTATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGTCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACAC
TCTTCTGGGGAAAAGCTTGGGGGAGGCCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTTTTCTGGGGAAAGGCTTGGGGAGGC
CTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCAAGGAAATTCCCGGGCCTCTCTTCAAG
CGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAACTCCCGAGCCTCTCTTCGAGCTGTCTTGGGAGGCCAAGGAAACTCCC
GAGCCTCTCTTCGAGCTGTTATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTC
ATCACAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCATACTCTCTTCTG
GGGAAGTGCGGAAGTCTGGCCACACGCGTGACCTCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAAAACTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTC
TTCTGGGGAAAAGCTTGGGGAGGTCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCAA
GGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTTTTCTGGGGAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCG
TCATGGTTATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGTCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACAC
TCTTCTGGGGAAAAGCTTGGGGGAGGCCAAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTTTTCTGGGGAAAGGCTTGGGGAGGC
CTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCAAGGAAATTCCCGGGCCTCTCTTCAAG
CGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAACTCCCGAGCCTCTCTTCGAGCTGTCTTGGGAGGCCAAGGAAACTCCC
GAGCCTCTCTTCGAGCTGTTATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTC
ATCACAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCATACTCTCTTCTG
GGGAAGTGCGGAAGTCTGGCCACACGCGTGACCTCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAAAACTTCATTAA
Protein sequenceShow/hide protein sequence
MVIPGVRTLFWGKAWGGLGNSRASLQASWSSQGCVHSSGEKLGEVKEIPGPLFKRHGHPRGAYTLLGKSLGRPRKFPGLSSSVMVIPGVRTLFWGKAWGGLGNSRASLQA
SWLSQGCVHSSGEKLGEVKEIPGPLFKRHGHPRGAYTLLGKSLGEAKEIPGPLFKRHGHPRGAYTFLGKGLGRPRKFPSLSSSVMVIPGVRTLFWGKLGEAKEIPGPLFK
RHGHPRGAYTLLGKGLGRPRKLPSLSSSCLGRPRKLPSLSSSCYSHPRGAYTLLGKGLGRPRKFPSLSSSCCSHHRGAYTLLGKGLGRPRKFPSLSSSCCIHPEGAYSLL
GKCGSLATRVTSYGKSTLCETQCKKLH