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Lag0040803 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040803
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionKeratin, type II cytoskeletal 1-like
Genome locationchr13:8506423..8509727
RNA-Seq ExpressionLag0040803
SyntenyLag0040803
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]3.6e-2037.5Show/hide
Query:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL
        S+  ++     +K +  KL +DN+L+WKFQ+L  L+ + L+ F++ + E P K+L +T  S  ++ R  NP ++ W RQD LI++W LGSMS  I+ ++L
Subjt:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL

Query:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK
         CK+++E+W  L   FSS+ +A+ +  K KL  + K
Subjt:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]3.6e-2037.5Show/hide
Query:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL
        S+  ++     +K +  KL +DN+L+WKFQ+L  L+ + L+ F++ + E P K+L +T  S  ++ R  NP ++ W RQD LI++W LGSMS  I+ ++L
Subjt:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL

Query:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK
         CK+++E+W  L   FSS+ +A+ +  K KL  + K
Subjt:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK

XP_010252418.1 PREDICTED: uncharacterized protein LOC104593993 [Nelumbo nucifera]6.2e-2040.14Show/hide
Query:  DASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIV
        D   ++  + S F+N      + KLD  N+L+W  Q   +L+GH L  ++D  +  PP FL   S   S R SN DH   + QD LI +W L S++ P++
Subjt:  DASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIV

Query:  AELLDCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIKVILDHTD
        A+++ CKTSREVWD L   FSS    RI DLK +L ++ K  L  TD
Subjt:  AELLDCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIKVILDHTD

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]1.1e-2742.47Show/hide
Query:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARI--SNPDHEYWIRQDNLITAW
        M+S +S R++       ASK +NPGSK +  +L++DN L+WKFQ+   L+G+GL+ +ID + + P +F+ TT +++S+     NP +  WI+QD LI+AW
Subjt:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARI--SNPDHEYWIRQDNLITAW

Query:  FLGSMSTPIVAELLDCKTSREVWDYLATRFSSKQVARILDLKTKLD
         LGSM+  I++++LDCK++RE+W  L   F+S+ +AR++ LK KL+
Subjt:  FLGSMSTPIVAELLDCKTSREVWDYLATRFSSKQVARILDLKTKLD

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]3.0e-2244.63Show/hide
Query:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFL
        M+ S+SE D++ V     S  VNPG+K +T KL+++N+L+W+ Q+   L+GHGL KFID + ++P +F+ +  E +S    NP+   W RQD LIT+W L
Subjt:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFL

Query:  GSMSTPIVAELLDCKTSREVW
        GSMS  I++++L+C+T++EVW
Subjt:  GSMSTPIVAELLDCKTSREVW

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2036.03Show/hide
Query:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARIS--NPDHEYWIRQDNLITAWFLGSMSTPIVAELL
        S+  ++    G+K +  KL++D +L+WKFQ+L  L+ + L+ F++ + E P K+L +T   +++     NP ++ W RQD LI++W LGSMS  I+ ++L
Subjt:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARIS--NPDHEYWIRQDNLITAWFLGSMSTPIVAELL

Query:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK
         CK+++E+W+ L   FSS+ +A+ +  K KL  + K
Subjt:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like1.8e-2037.5Show/hide
Query:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL
        S+  ++     +K +  KL +DN+L+WKFQ+L  L+ + L+ F++ + E P K+L +T  S  ++ R  NP ++ W RQD LI++W LGSMS  I+ ++L
Subjt:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL

Query:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK
         CK+++E+W  L   FSS+ +A+ +  K KL  + K
Subjt:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like1.8e-2037.5Show/hide
Query:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL
        S+  ++     +K +  KL +DN+L+WKFQ+L  L+ + L+ F++ + E P K+L +T  S  ++ R  NP ++ W RQD LI++W LGSMS  I+ ++L
Subjt:  SATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTT--SEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAELL

Query:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK
         CK+++E+W  L   FSS+ +A+ +  K KL  + K
Subjt:  DCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIK

A0A6J1DLT9 uncharacterized protein LOC1110217575.1e-2842.47Show/hide
Query:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARI--SNPDHEYWIRQDNLITAW
        M+S +S R++       ASK +NPGSK +  +L++DN L+WKFQ+   L+G+GL+ +ID + + P +F+ TT +++S+     NP +  WI+QD LI+AW
Subjt:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARI--SNPDHEYWIRQDNLITAW

Query:  FLGSMSTPIVAELLDCKTSREVWDYLATRFSSKQVARILDLKTKLD
         LGSM+  I++++LDCK++RE+W  L   F+S+ +AR++ LK KL+
Subjt:  FLGSMSTPIVAELLDCKTSREVWDYLATRFSSKQVARILDLKTKLD

A0A6J1E314 uncharacterized protein LOC1110255721.4e-2244.63Show/hide
Query:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFL
        M+ S+SE D++ V     S  VNPG+K +T KL+++N+L+W+ Q+   L+GHGL KFID + ++P +F+ +  E +S    NP+   W RQD LIT+W L
Subjt:  MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFL

Query:  GSMSTPIVAELLDCKTSREVW
        GSMS  I++++L+C+T++EVW
Subjt:  GSMSTPIVAELLDCKTSREVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTCCACCTCCGAACGTGATGCTTCTGAAGTTCTTTCTGCTACTGCTTCCAAGTTTGTCAATCCAGGAAGTAAAACTACAACGCCAAAATTAGATGAAGATAA
CTATCTTATGTGGAAGTTTCAAGTATTAATTACTTTGAAAGGTCATGGATTGCAGAAGTTTATCGATGTCGACTATGAAGTTCCGCCAAAGTTTCTTCCCACAACCAGCG
AAGATACCTCTGCCAGAATCTCCAACCCAGATCATGAGTACTGGATTCGGCAAGATAATCTGATTACGGCTTGGTTTCTTGGATCAATGTCGACTCCAATTGTTGCAGAA
TTGCTCGATTGCAAAACTTCGCGAGAGGTATGGGATTATCTTGCTACTCGTTTCTCTTCTAAGCAAGTTGCTCGAATTCTTGACCTAAAGACTAAGCTTGATTTTGTTAT
CAAGGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTT
TTCGGTCCCTGATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAACAGCTTCTCCTCGGTTTTCTGAC
TTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGCCCAGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGG
CACACATGTTGTAGTTCTCCACACTGTCGCAACTTGCAACCATTTGTTCACCCACTACCGCAACCTAGAACTTGTGTTCTCTCCTTCCTTGGCCACTATTCTCCCATTCC
CCCAGCCATATGAGGTTTCAAGCAGGCTGCAGCGATCGTCTCAGCAGGATACAATGACCGATTCCAGTAGAACAGCGACCTCGAACTACTTGGGTCTGACAAAACTCTTG
GATACTTGTTCTCAACTCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTCCACCTCCGAACGTGATGCTTCTGAAGTTCTTTCTGCTACTGCTTCCAAGTTTGTCAATCCAGGAAGTAAAACTACAACGCCAAAATTAGATGAAGATAA
CTATCTTATGTGGAAGTTTCAAGTATTAATTACTTTGAAAGGTCATGGATTGCAGAAGTTTATCGATGTCGACTATGAAGTTCCGCCAAAGTTTCTTCCCACAACCAGCG
AAGATACCTCTGCCAGAATCTCCAACCCAGATCATGAGTACTGGATTCGGCAAGATAATCTGATTACGGCTTGGTTTCTTGGATCAATGTCGACTCCAATTGTTGCAGAA
TTGCTCGATTGCAAAACTTCGCGAGAGGTATGGGATTATCTTGCTACTCGTTTCTCTTCTAAGCAAGTTGCTCGAATTCTTGACCTAAAGACTAAGCTTGATTTTGTTAT
CAAGGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTT
TTCGGTCCCTGATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAACAGCTTCTCCTCGGTTTTCTGAC
TTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGCCCAGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGG
CACACATGTTGTAGTTCTCCACACTGTCGCAACTTGCAACCATTTGTTCACCCACTACCGCAACCTAGAACTTGTGTTCTCTCCTTCCTTGGCCACTATTCTCCCATTCC
CCCAGCCATATGAGGTTTCAAGCAGGCTGCAGCGATCGTCTCAGCAGGATACAATGACCGATTCCAGTAGAACAGCGACCTCGAACTACTTGGGTCTGACAAAACTCTTG
GATACTTGTTCTCAACTCAACTAA
Protein sequenceShow/hide protein sequence
MSSSTSERDASEVLSATASKFVNPGSKTTTPKLDEDNYLMWKFQVLITLKGHGLQKFIDVDYEVPPKFLPTTSEDTSARISNPDHEYWIRQDNLITAWFLGSMSTPIVAE
LLDCKTSREVWDYLATRFSSKQVARILDLKTKLDFVIKVILDHTDGQGADEDNRAEAEADHSARLRGPSPVTSFRSLMPRIAPVSPGSPRNTTEFLKTLGGQTASPRFSD
LGIGGGVAYTTPVCSGFCWSCRSRPVPTNSLLVSREGTHVVVLHTVATCNHLFTHYRNLELVFSPSLATILPFPQPYEVSSRLQRSSQQDTMTDSSRTATSNYLGLTKLL
DTCSQLN